Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq44759 143 3e-29 seq87603 125 8e-24 seq50088 125 8e-24 seq50989 122 9e-23 seq85017 114 1e-20 seq59239 114 1e-20 seq103297 100 3e-16 seq17630 96.9 4e-15 seq1166 87.8 2e-12 >seq44759 Length=4973 Score = 143 bits (158), Expect = 3e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| || | ||| | || | |||||| || ||||||||| || ||||| || ||| Sbjct 4442 CCTCCCCTGAGACGAAGGACAAGATGCAAGGTCGACTCCTTTTGGATGTTGTAGTCGGCC 4383 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || |||| | || || | ||||||||||||||| ||||| ||||||||||| | ||| Sbjct 4382 AGCGTCCTACCATCTTCCAACTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGTGGA 4323 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 42160 | || |||||||||| ||| || |||| ||| | | | ||||| || ||||| Sbjct 4322 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGAAGACTCCAC 4264 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || | |||||||||||||| || |||||||| || ||||| ||||| || Sbjct 4263 CTCAAGGGTGATGGTTTTGCCGGTGAGCGTCTTCACGAAGATCTGCATGTT 4213 Score = 111 bits (122), Expect = 2e-19 Identities = 166/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || || | ||| | |||| |||||| || ||||| ||||| ||||| || || Sbjct 4899 ACCACCCCTCAGACGAAGGACCAGATGCAACGTTGATTCCTTCTGAATGTTGTAGTCGGC 4840 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || ||||||||||| ||||| ||||| |||||||| || | ||| Sbjct 4839 TAGGGTTCGGCCATCCTCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCAGGTGG 4780 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCG---CTCGATT 42156 | | ||||||||| ||| || |||| ||| | | | |||||| ||| | Sbjct 4779 GATACCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCAATGGTGTCGGAACTC---T 4724 Query 42157 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || || | ||||||||| || || ||||| || || || ||||||||||| Sbjct 4723 CAACTTCCAACGTGATGGTCTTCCCAGTTAGGGTTTTGACGAAGATTTGCAT 4672 Score = 105 bits (116), Expect = 7e-18 Identities = 141/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || || || || || | || || |||||||||||||| || Sbjct 4635 CTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCATCCTCGAGCTGCTTACCAGCAAA 4576 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || | ||||||||||||| || | | |||||||||| ||| || |||| | Sbjct 4575 GATCAACCGCTGCTGGTCGGGGGGTATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 4516 Query 42137 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | |||||| |||| || || |||| |||||||| ||||| ||||| ||||| Sbjct 4515 ATCGATCGTGTCGGAGCTC---TCGACCTCGAGGGTGATGGTCTTGCCAGTTAGGGTCTT 4459 Query 42194 TACAAAGATTTGCAT 42208 || ||||| ||||| Sbjct 4458 GACGAAGATCTGCAT 4444 >seq87603 Length=1014 Score = 125 bits (138), Expect = 8e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || || || | ||||||||||||||| | || |||||| ||||| ||||| || || Sbjct 724 CCACCCCTAAGACGCAACACCAAATGGAGCGTCGACTCCTTCTGAATGTTGTAGTCGGCT 783 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || ||| | || || |||||||| || || || || | |||||||||||||| || Sbjct 784 AGGGTTCGCCCATCCTCGAGCTGCTTCCCGGCAAAGATCAATCGCTGCTGGTCGGGCGGA 843 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 42160 | || |||||||||| ||| || |||| ||| | | | |||||| || || || Sbjct 844 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATCGTGTCAGAAGACTCAAC 902 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||| || ||||| ||||| || || || ||||| ||||| Sbjct 903 CTCCAAGGTGATCGTCTTGCCAGTTAGGGTTTTCACGAAGATCTGCAT 950 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||| ||| | ||| |||||| ||||| ||||| || |||| || || | || || Sbjct 513 CACCAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGCCAAGGTACGACCATCCTC 572 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||||||||| || || | ||||||||||| | || | || |||||||||| Sbjct 573 GAGCTGCTTACCAGCAAAGATCAAACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTG 632 Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 ||| || |||| | | | || || || || || || | ||||| || || Sbjct 633 GATCTTAGCCTTGACATTGTCAATGGTATCAGAAGACTCAACCTCTAGGGTGATTGTCTT 692 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||||| |||||||| || || || ||||| Sbjct 693 GCCCGTGAGCGTCTTGACGAAAATCTGCAT 722 >seq50088 Length=882 Score = 125 bits (138), Expect = 8e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || || || | ||||||||||||||| | || |||||| ||||| ||||| || || Sbjct 592 CCACCCCTAAGACGCAACACCAAATGGAGCGTCGACTCCTTCTGAATGTTGTAGTCGGCT 651 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || ||| | || || |||||||| || || || || | |||||||||||||| || Sbjct 652 AGGGTTCGCCCATCCTCGAGCTGCTTCCCGGCAAAGATCAATCGCTGCTGGTCGGGCGGA 711 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 42160 | || |||||||||| ||| || |||| ||| | | | |||||| || || || Sbjct 712 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATCGTGTCAGAAGACTCAAC 770 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||| || ||||| ||||| || || || ||||| ||||| Sbjct 771 CTCCAAGGTGATCGTCTTGCCAGTTAGGGTTTTCACGAAGATCTGCAT 818 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||| ||| | ||| |||||| ||||| ||||| || |||| || || | || || Sbjct 381 CACCAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGCCAAGGTACGACCATCCTC 440 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||||||||| || || | ||||||||||| | || | || |||||||||| Sbjct 441 GAGCTGCTTACCAGCAAAGATCAAACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTG 500 Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 ||| || |||| | | | || || || || || || | ||||| || || Sbjct 501 GATCTTAGCCTTGACATTGTCAATGGTATCAGAAGACTCAACCTCTAGGGTGATTGTCTT 560 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||||| |||||||| || || || ||||| Sbjct 561 GCCCGTGAGCGTCTTGACGAAAATCTGCAT 590 >seq50989 Length=854 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || || | ||||| |||| ||||| || |||||| ||||| ||||| || || Sbjct 474 ACCACCCCTGAGACGCAGTACCAGGTGCAACGTCGACTCCTTCTGAATGTTGTAGTCGGC 533 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || ||||||||||||||||| ||||| ||||||||||| | ||| Sbjct 534 TAGGGTACGGCCATCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGTGG 593 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 42159 | | |||||||||| ||| || |||| ||| | | | ||||| || || | Sbjct 594 GATACCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCAATGGTGTCAGAAGACTCGA 652 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | |||||||| || || ||||| || || || ||||| ||||| Sbjct 653 CCTCAAGGGTGATGGTCTTCCCGGTTAGGGTTTTGACGAAGATCTGCAT 701 Score = 114 bits (126), Expect = 1e-20 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| || | ||||| |||||||| | || |||||| || || ||||| || ||| Sbjct 247 CCTCCCCTGAGACGCAGTACCAAATGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGGCC 306 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || |||| | || || ||||||||||||||||| || | ||||||||||| | || Sbjct 307 AGCGTCCTACCATCCTCAAGCTGCTTACCAGCGAAGATCAACCGCTGCTGGTCTGGCGGG 366 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 42159 | | |||||||||| ||| | || | |||| ||| | | | || ||| || || | Sbjct 367 ATACCCTCCTTGTCC-TGAATCTTAGCCTTGA-CGTTGTCGATGGTATCGGAAGACTCGA 424 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | || ||||| || |||||||| ||||| || ||||| ||||| Sbjct 425 CCTCTAGGGTAATGGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 473 >seq85017 Length=850 Score = 114 bits (126), Expect = 1e-20 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| || | ||||| |||||||| | || |||||| || || ||||| || ||| Sbjct 443 CCTCCCCTGAGACGCAGTACCAAATGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGGCC 502 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || |||| | || || ||||||||||||||||| || | ||||||||||| | || Sbjct 503 AGCGTCCTACCATCCTCAAGCTGCTTACCAGCGAAGATCAACCGCTGCTGGTCTGGCGGG 562 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 42159 | | |||||||||| ||| | || | |||| ||| | | | || ||| || || | Sbjct 563 ATACCCTCCTTGTCC-TGAATCTTAGCCTTGA-CGTTGTCGATGGTATCGGAAGACTCGA 620 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | || ||||| || |||||||| ||||| || ||||| ||||| Sbjct 621 CCTCTAGGGTAATGGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 669 Score = 102 bits (112), Expect = 9e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || || | ||||| |||| ||||| || |||||| ||||| ||||| || || Sbjct 670 ACCACCCCTGAGACGCAGTACCAGGTGCAACGTCGACTCCTTCTGAATGTTGTAGTCGGC 729 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || ||||||||||||||||| ||||| ||||||||||| | ||| Sbjct 730 TAGGGTACGGCCATCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGTGG 789 Query 42101 CACGCTCTCCTTGTCCATGATTTT 42124 | | |||||||||| ||| || Sbjct 790 GATACCCTCCTTGTCCTGGATCTT 813 >seq59239 Length=983 Score = 114 bits (126), Expect = 1e-20 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| || | ||||| |||||||| | || |||||| || || ||||| || ||| Sbjct 576 CCTCCCCTGAGACGCAGTACCAAATGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGGCC 635 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || |||| | || || ||||||||||||||||| || | ||||||||||| | || Sbjct 636 AGCGTCCTACCATCCTCAAGCTGCTTACCAGCGAAGATCAACCGCTGCTGGTCTGGCGGG 695 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 42159 | | |||||||||| ||| | || | |||| ||| | | | || ||| || || | Sbjct 696 ATACCCTCCTTGTCC-TGAATCTTAGCCTTGA-CGTTGTCGATGGTATCGGAAGACTCGA 753 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | || ||||| || |||||||| ||||| || ||||| ||||| Sbjct 754 CCTCTAGGGTAATGGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 802 Score = 102 bits (112), Expect = 9e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || || | ||||| |||| ||||| || |||||| ||||| ||||| || || Sbjct 803 ACCACCCCTGAGACGCAGTACCAGGTGCAACGTCGACTCCTTCTGAATGTTGTAGTCGGC 862 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || ||||||||||||||||| ||||| ||||||||||| | ||| Sbjct 863 TAGGGTACGGCCATCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGTGG 922 Query 42101 CACGCTCTCCTTGTCCATGATTTT 42124 | | |||||||||| ||| || Sbjct 923 GATACCCTCCTTGTCCTGGATCTT 946 >seq103297 Length=6425 Score = 100 bits (110), Expect = 3e-16 Identities = 136/187 (73%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||| ||||| || |||||| || || ||||| || ||||| || ||| | || || Sbjct 4671 CACCAGGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGCCCATCCTC 4730 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||| |||||||| ||||| | ||||||||||| || | || |||||||||| | Sbjct 4731 CAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCCTCCTTGTCC-T 4789 Query 42119 GATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 42177 || | || | || | | | | || || ||||| || |||| |||||||||| Sbjct 4790 GAATCTTGGCCTTCACATTGTCGATGGTATCCGAGGATTCAACCTCGAGGGTGATGGTTT 4849 Query 42178 TGCCCGT 42184 | ||||| Sbjct 4850 TCCCCGT 4856 >seq17630 Length=252 Score = 96.9 bits (106), Expect = 4e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||||||||| ||| | |||| ||||| || || |||||||| |||| |||| | || Sbjct 131 CGCAACACCAGATGGAGTGTGGATTCCTTCTGGATGTTGTAATCCGCCAACGTCCTCCCG 72 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || | |||||||||||||| || | ||||||||| || | ||| | || |||||| Sbjct 71 TCCTCCAATTGCTTACCAGCGAAGATCAATCGCTGCTGATCCGGTGGGATGCCCTCCTTA 12 Query 42114 TCCATGATTTT 42124 ||| ||| || Sbjct 11 TCCTGGATCTT 1 >seq1166 Length=240 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||||||||| ||| | || |||||| || || |||||||| |||| |||| | | Sbjct 73 CGCAACACCAGATGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGCCAACGTCCTCCCT 132 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || | |||||||||||||| || | ||||||||| |||| || | || |||||| Sbjct 133 TCCTCCAATTGCTTACCAGCGAAGATCAATCGCTGCTGATCGGGCGGGATGCCCTCCTTA 192 Query 42114 TCCATGATTTT 42124 ||| ||| || Sbjct 193 TCCTGGATCTT 203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542493626993760