Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq87603 107 2e-18 seq50088 107 2e-18 seq77395 104 2e-17 seq85017 98.7 1e-15 seq59239 98.7 1e-15 seq50989 98.7 1e-15 seq103297 96.9 3e-15 seq44759 96.9 3e-15 seq102373 95.1 1e-14 seq45558 86.0 6e-12 >seq87603 Length=1014 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||||| || || || || ||||||||||| || || | ||| || | || Sbjct 511 AGCACCAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGCCAAGGTACGACCATCC 570 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| || ||| | || | ||||||||||| |||||||| || || || || Sbjct 571 TCGAGCTGCTTACCAGCAAAGATCAAACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 630 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | |||||| | || || |||| || | ||| Sbjct 631 TGGATCTTAGCCTTGACATTGTCAATGGTATCAGAAGACTCAACCTCTAGGGTGATTGTC 690 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || | || || |||||||| ||||| Sbjct 691 TTGCCCGTGAGCGTCTTGACGAAAATCTGCAT 722 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||| | ||| | |||||| || || ||||||||||| || || | ||| ||| | || || Sbjct 741 CACCAAATGGAGCGTCGACTCCTTCTGAATGTTGTAGTCGGCTAGGGTTCGCCCATCCTC 800 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 |||||||| |||||| | || | |||||||||||||| ||||| || || || || || Sbjct 801 GAGCTGCTTCCCGGCAAAGATCAATCGCTGCTGGTCGGGCGGAATGCCCTCCTTGTCCTG 860 Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 || || ||| || || | || ||| | || || || | || | ||||| Sbjct 861 GATCTTGGCCTTGACGTTGTCGATCGTGTCAGAAGACTCAACCTCCAAGGTGATCGTCTT 920 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| || | ||||| ||||| || ||||| Sbjct 921 GCCAGTTAGGGTTTTCACGAAGATCTGCAT 950 >seq50088 Length=882 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||||| || || || || ||||||||||| || || | ||| || | || Sbjct 379 AGCACCAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGCCAAGGTACGACCATCC 438 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| || ||| | || | ||||||||||| |||||||| || || || || Sbjct 439 TCGAGCTGCTTACCAGCAAAGATCAAACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 498 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | |||||| | || || |||| || | ||| Sbjct 499 TGGATCTTAGCCTTGACATTGTCAATGGTATCAGAAGACTCAACCTCTAGGGTGATTGTC 558 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || | || || |||||||| ||||| Sbjct 559 TTGCCCGTGAGCGTCTTGACGAAAATCTGCAT 590 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||| | ||| | |||||| || || ||||||||||| || || | ||| ||| | || || Sbjct 609 CACCAAATGGAGCGTCGACTCCTTCTGAATGTTGTAGTCGGCTAGGGTTCGCCCATCCTC 668 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 |||||||| |||||| | || | |||||||||||||| ||||| || || || || || Sbjct 669 GAGCTGCTTCCCGGCAAAGATCAATCGCTGCTGGTCGGGCGGAATGCCCTCCTTGTCCTG 728 Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 || || ||| || || | || ||| | || || || | || | ||||| Sbjct 729 GATCTTGGCCTTGACGTTGTCGATCGTGTCAGAAGACTCAACCTCCAAGGTGATCGTCTT 788 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| || | ||||| ||||| || ||||| Sbjct 789 GCCAGTTAGGGTTTTCACGAAGATCTGCAT 818 >seq77395 Length=9811 Score = 104 bits (114), Expect = 2e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | |||||||| ||||| |||||||| || || | ||| ||| | || Sbjct 1267 AGCACGAGGTGCAGAGTCGATTCCTTTTGGATGTTGTAGTCAGCCAGGGTTCGCCCATCC 1326 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | ||||||| |||||| || || || || || ||||| || Sbjct 1327 TCCAGCTGCTTGCCCGCAAAGATGAGCCTCTGCTGATCAGGTGGGATCCCCTCTTTGTCC 1386 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | ||||| || || || || | || | |||| Sbjct 1387 TGAATCTTGGCCTTCACATTGTCGATGGTATCCGAGGACTCAACCTCGAGGGTGATGGTC 1446 Query 64412 TTGCCGGTCA 64421 || ||||||| Sbjct 1447 TTCCCGGTCA 1456 >seq85017 Length=850 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || || || || || |||||||| || || | |||||| | || Sbjct 230 AGAACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCATCC 289 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| || || | ||||| ||||||||||| |||||||||||||| || || Sbjct 290 TCCAGCTGCTTCCCTGCGAAGATGAGACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCC 349 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || || | ||||| || || || | || | |||| Sbjct 350 TGGATCTTGGCCTTAACGTTGTCAATAGTATCGGAACTCTCAACCTCCAAGGTGATGGTC 409 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || | ||| || |||||||| ||||| Sbjct 410 TTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 441 >seq59239 Length=983 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || || || || || |||||||| || || | |||||| | || Sbjct 363 AGAACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCATCC 422 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| || || | ||||| ||||||||||| |||||||||||||| || || Sbjct 423 TCCAGCTGCTTCCCTGCGAAGATGAGACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCC 482 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || || | ||||| || || || | || | |||| Sbjct 483 TGGATCTTGGCCTTAACGTTGTCAATAGTATCGGAACTCTCAACCTCCAAGGTGATGGTC 542 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || | ||| || |||||||| ||||| Sbjct 543 TTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 574 >seq50989 Length=854 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || || || || || |||||||| || || | |||||| | || Sbjct 34 AGAACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCATCC 93 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| || || | ||||| ||||||||||| |||||||||||||| || || Sbjct 94 TCCAGCTGCTTCCCTGCGAAGATGAGACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCC 153 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || || | ||||| || || || | || | |||| Sbjct 154 TGGATCTTGGCCTTAACGTTGTCAATAGTATCGGAACTCTCAACCTCCAAGGTGATGGTC 213 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || | ||| || |||||||| ||||| Sbjct 214 TTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 245 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || || | |||||| || || ||||||||||| || || | ||| || | || Sbjct 490 AGTACCAGGTGCAACGTCGACTCCTTCTGAATGTTGTAGTCGGCTAGGGTACGGCCATCC 549 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| || || | ||||| ||||||||||| || || || || || || || Sbjct 550 TCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCC 609 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || || | || ||| | || || || | || | |||| Sbjct 610 TGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAAGACTCGACCTCAAGGGTGATGGTC 669 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||||| | ||||| ||||| || ||||| Sbjct 670 TTCCCGGTTAGGGTTTTGACGAAGATCTGCAT 701 >seq103297 Length=6425 Score = 96.9 bits (106), Expect = 3e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | ||||| || || || |||||||| || || | ||||||| | || Sbjct 4669 AGCACCAGGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGCCCATCC 4728 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || | ||||||| ||||||||||||||| || || || || || Sbjct 4729 TCCAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCCTCCTTGTCC 4788 Query 64352 TGTATTTT 64359 || || || Sbjct 4789 TGAATCTT 4796 >seq44759 Length=4973 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||| | ||| ||||| || ||||||||||| || || | ||| || | || Sbjct 4884 AAGGACCAGATGCAACGTTGATTCCTTCTGAATGTTGTAGTCGGCTAGGGTTCGGCCATC 4825 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || |||||||| ||||| | ||||| |||||||| || || || || ||||| || || Sbjct 4824 CTCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCAGGTGGGATACCTTCCTTGTC 4765 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| || || | || || || ||||| | || | ||| Sbjct 4764 CTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAACTCTCAACTTCCAACGTGATGGT 4705 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| || || | ||||| ||||| |||||||| Sbjct 4704 CTTCCCAGTTAGGGTTTTGACGAAGATTTGCAT 4672 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || |||| | |||||| || |||| || || || || || |||||||| || || Sbjct 4670 CCACCACGCAGACGAAGCACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCT 4611 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||| || | || || |||||||| || ||| | || | ||||||||||||||| || Sbjct 4610 AGGGTTCGGCCATCCTCGAGCTGCTTACCAGCAAAGATCAACCGCTGCTGGTCGGGGGGT 4551 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| || || | || || | || || Sbjct 4550 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTATCGATCGTGTCGGAGCTCTCGACC 4491 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||||||| || | || || ||||| || ||||| Sbjct 4490 TCGAGGGTGATGGTCTTGCCAGTTAGGGTCTTGACGAAGATCTGCAT 4444 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||| | ||||| || ||||| |||||||| || || | || | | || Sbjct 4428 AAGGACAAGATGCAAGGTCGACTCCTTTTGGATGTTGTAGTCGGCCAGCGTCCTACCATC 4369 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| | |||||| || || | ||||| ||||||||||| || ||||| || || || || Sbjct 4368 TTCCAACTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGTGGAATGCCCTCCTTGTC 4309 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| || || | || || | ||||| || | || | ||| Sbjct 4308 CTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATGGT 4249 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTTAAT 64449 |||||||| | || || ||||| || ||||| || || Sbjct 4248 TTTGCCGGTGAGCGTCTTCACGAAGATCTGCATGTTGAT 4210 >seq102373 Length=7923 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | |||||| || || || |||||||| || || | ||| || | || Sbjct 7714 AGCACCAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGTCCATCC 7773 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || | || | | |||||| || |||||||| || || || ||| Sbjct 7774 TCCAGCTGCTTGCCCGCGAAGATCAATCTCTGCTGATCCGGAGGAATGCCCTCCTTGTCT 7833 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || || | ||||| | || || |||| || | |||| Sbjct 7834 TGGATCTTAGCCTTGACGTTGTCAATGGTATCCGAAGACTCAACCTCTAGGGTAATGGTC 7893 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGC 64441 || || || | ||| || ||||| |||||| Sbjct 7894 TTACCCGTGAGAGTCTTCACGAAGATTTGC 7923 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| ||||||| || || || || ||||||||||| || || | ||| || | || Sbjct 7485 AAGCACCAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGCTAAGGTACGACCATC 7544 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || | |||||| |||||| | || | |||||||| || |||||||| || || || || Sbjct 7545 CTCCAACTGCTTCCCGGCAAAGATCAAACGCTGCTGATCCGGAGGAATGCCCTCCTTGTC 7604 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| || || | ||||| || || |||| || | ||| Sbjct 7605 CTGGATCTTGGCCTTGACGTTGTCGATGGTATCCGAACTCTCGACCTCTAGGGTGATGGT 7664 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| || || | ||||| ||||| || ||||| Sbjct 7665 CTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 7697 >seq45558 Length=3192 Score = 86.0 bits (94), Expect = 6e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315 || || |||||||| || |||| ||||||| | ||||| |||||||| ||||| | || Sbjct 3020 TTCTGGATGTTGTAGTCCGCGAGGGTGCGCCCATCTTCGAGCTGCTTCCCGGCGAAGATC 3079 Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCT 64342 || ||||||||||| || ||||||||| Sbjct 3080 AGACGCTGCTGGTCAGGGGGAATTCCT 3106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 498983307758160