Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq77036 91.5 1e-13 seq95935 86.0 6e-12 >seq77036 Length=9932 Score = 91.5 bits (100), Expect = 1e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 95075 AACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGA 95134 ||||||| || ||| ||||||| || || |||||||| || || |||||| |||| Sbjct 1837 AACACGGAGTCCGGAACTCGCTGCTCGTTGCTCCCATGCCGACTGCTTCCACGAGTCAGA 1778 Query 95135 TCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGT 95192 | || ||||||||||||| |||||||||| ||| ||||| | |||| ||| |||| Sbjct 1777 TACTCGGCAACAACGAGTGCTTCGAACCCTACACTTCCAATATCTACAGCAGAAGGGT 1720 >seq95935 Length=4297 Score = 86.0 bits (94), Expect = 6e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 95078 ACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCC 95137 |||| |||| |||| | ||||| || || ||||||||||| || ||||| ||||||| Sbjct 1314 ACGGAGTGAGAAACTCTCTGCTGGTTGCACCCATGCCCACCGCGTCCACCAGTCAGATCC 1373 Query 95138 TTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACA 95182 | ||||| ||||||| ||||| || | |||||| ||| | |||| Sbjct 1374 TCGGCAATAACGAGTGCTTCGAGCCGTACACCTCAAACATCTACA 1418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494068223587440