Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq87603 102 8e-17 seq50088 102 8e-17 seq50989 100 3e-16 seq44759 89.7 5e-13 seq85017 87.8 2e-12 seq59239 87.8 2e-12 >seq87603 Length=1014 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 138399 ACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGA 138458 |||||| || ||||| | | |||||||| ||||||||||||||| | || ||| Sbjct 735 ACGCAACACCAAATGGAGCGTCGACTCCTTCTGAATGTTGTAGTCGGCTAGGGTTCGCCC 794 Query 138459 GTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTT 138518 |||||||| || || |||| | |||| | ||||| ||||| || || || || || || Sbjct 795 ATCCTCGAGCTGCTTCCCGGCAAAGATCAATCGCTGCTGGTCGGGCGGAATGCCCTCCTT 854 Query 138519 GTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578 ||| ||| || || | | || | ||||| | ||||| ||||| | || | Sbjct 855 GTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCAGAAGACTCAACCTCCAAGGTGAT 914 Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| || ||||| || ||||| || || |||||||| Sbjct 915 CGTCTTGCCAGTTAGGGTTTTCACGAAGATCTGCAT 950 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| |||||||||||||| || ||||| |||||||| || ||||| | | Sbjct 529 GACTCCTTCTGAATGTTGTAGTCCGCCAAGGTACGACCATCCTCGAGCTGCTTACCAGCA 588 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| | |||||| ||||| ||||| || || || ||||| ||| || || | | Sbjct 589 AAGATCAAACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTGACA 648 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||| || | ||||| ||||| | || | || || || || || || || Sbjct 649 TTG-TCAATGGTATCAGAAGACTCAACCTCTAGGGTGATTGTCTTGCCCGTGAGCGTCTT 707 Query 138600 TACAAAAATCTGCATG 138615 || |||||||||||| Sbjct 708 GACGAAAATCTGCATG 723 >seq50088 Length=882 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 138399 ACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGA 138458 |||||| || ||||| | | |||||||| ||||||||||||||| | || ||| Sbjct 603 ACGCAACACCAAATGGAGCGTCGACTCCTTCTGAATGTTGTAGTCGGCTAGGGTTCGCCC 662 Query 138459 GTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTT 138518 |||||||| || || |||| | |||| | ||||| ||||| || || || || || || Sbjct 663 ATCCTCGAGCTGCTTCCCGGCAAAGATCAATCGCTGCTGGTCGGGCGGAATGCCCTCCTT 722 Query 138519 GTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578 ||| ||| || || | | || | ||||| | ||||| ||||| | || | Sbjct 723 GTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCAGAAGACTCAACCTCCAAGGTGAT 782 Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| || ||||| || ||||| || || |||||||| Sbjct 783 CGTCTTGCCAGTTAGGGTTTTCACGAAGATCTGCAT 818 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| |||||||||||||| || ||||| |||||||| || ||||| | | Sbjct 397 GACTCCTTCTGAATGTTGTAGTCCGCCAAGGTACGACCATCCTCGAGCTGCTTACCAGCA 456 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| | |||||| ||||| ||||| || || || ||||| ||| || || | | Sbjct 457 AAGATCAAACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTGACA 516 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||| || | ||||| ||||| | || | || || || || || || || Sbjct 517 TTG-TCAATGGTATCAGAAGACTCAACCTCTAGGGTGATTGTCTTGCCCGTGAGCGTCTT 575 Query 138600 TACAAAAATCTGCATG 138615 || |||||||||||| Sbjct 576 GACGAAAATCTGCATG 591 >seq50989 Length=854 Score = 100 bits (110), Expect = 3e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||||||| | ||||| |||||||| || ||||| | Sbjct 508 GACTCCTTCTGAATGTTGTAGTCGGCTAGGGTACGGCCATCCTCGAGCTGCTTACCAGCG 567 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| || || ||||| || ||||| ||| || || | Sbjct 568 AAGATGAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACG 627 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | ||||| ||||| | || | || || || || || ||||| Sbjct 628 TTGTCAATGGTGTCAGAAGACTCGACCTCAAGGGTGATGGTCTTCCCGGTTAGGGTTTTG 687 Query 138601 ACAAAAATCTGCATG 138615 || || ||||||||| Sbjct 688 ACGAAGATCTGCATG 702 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | ||| | ||| | | |||||||| || |||||||||||| Sbjct 19 CCACCACGCAGACGGAGAACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCA 78 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| || || || || | |||| |||||||| ||||| ||||| Sbjct 79 AGGGTGCGGCCATCCTCCAGCTGCTTCCCTGCGAAGATGAGACGCTGCTGGTCAGGAGGA 138 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| || | || | |||| ||| || | || |||| ||| | Sbjct 139 ATTCCTTCCTTGTC-CTGGATCTTGGCCTTAACGTTG-TCAATAGTATCGGAACTCTCAA 196 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || ||||| ||||| || || ||||||||||| Sbjct 197 CCTCCAAGGTGATGGTCTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 245 Score = 82.4 bits (90), Expect = 8e-11 Identities = 151/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 138399 ACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGA 138458 ||||| || ||||| | | |||||||| || |||||||||||| || || | Sbjct 258 ACGCAGTACCAAATGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTCCTACC 317 Query 138459 GTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTT 138518 ||||| || || ||||| | |||| | ||||| ||||| || || ||||| || || Sbjct 318 ATCCTCAAGCTGCTTACCAGCGAAGATCAACCGCTGCTGGTCTGGCGGGATACCCTCCTT 377 Query 138519 GTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTC 138576 ||| ||| | || | || | ||| || | ||| |||| ||||| ||||| | || Sbjct 378 GTC-CTGAATCTTAGCCTTGACGTTG-TCGATGGTATCGGAAGACTCGACCTCTAGGGTA 435 Query 138577 AGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || ||||| || || || || || || |||||||| Sbjct 436 ATGGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 473 >seq44759 Length=4973 Score = 89.7 bits (98), Expect = 5e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||| | || | || | | | |||||||| || |||||||||||| Sbjct 4671 GCCACCACGCAGACGAAGCACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGC 4612 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || |||||||| || ||||| | | |||| | ||||| ||||| || || Sbjct 4611 TAGGGTTCGGCCATCCTCGAGCTGCTTACCAGCAAAGATCAACCGCTGCTGGTCGGGGGG 4552 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||| || ||||| ||| || || | | || | ||||||| ||| || Sbjct 4551 TATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTATCGATCGTGTCGGAGCTCTCGAC 4492 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 ||||| || | || || ||||| || || || || || ||||||||| || Sbjct 4491 CTCGAGGGTGATGGTCTTGCCAGTTAGGGTCTTGACGAAGATCTGCATGCCT 4440 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||| ||||| ||||||||||||||| | || || ||||| || || ||||||| Sbjct 4867 TTGATTCCTTCTGAATGTTGTAGTCGGCTAGGGTTCGGCCATCCTCCAGCTGCTTACCGG 4808 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 |||| |||||||| || || || || |||||||| ||||| ||| || || | Sbjct 4807 CGAAGATGAGACGCTGCTGATCAGGTGGGATACCTTCCTTGTCCTGGATCTTGGCCTTGA 4748 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 | || | |||||||| ||| || || | ||| | || || ||||| || |||| Sbjct 4747 CGTTGTCAATGGTGTCGGAACTCTCAACTTCCAACGTGATGGTCTTCCCAGTTAGGGTTT 4688 Query 138599 TTACAAAAATCTGCATG 138615 | || || || |||||| Sbjct 4687 TGACGAAGATTTGCATG 4671 Score = 86.0 bits (94), Expect = 6e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| |||||||||||| || || | || || | || ||||| | Sbjct 4409 GACTCCTTTTGGATGTTGTAGTCGGCCAGCGTCCTACCATCTTCCAACTGCTTACCAGCG 4350 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| |||||||| || || || || ||||| ||| || || | Sbjct 4349 AAGATGAGACGCTGCTGGTCCGGTGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACG 4290 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | ||||||||||| | || | ||||| || || || || || Sbjct 4289 TTGTCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATGGTTTTGCCGGTGAGCGTCTTC 4230 Query 138601 ACAAAAATCTGCATG 138615 || || ||||||||| Sbjct 4229 ACGAAGATCTGCATG 4215 >seq85017 Length=850 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | ||| | ||| | | |||||||| || |||||||||||| Sbjct 215 CCACCACGCAGACGGAGAACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCA 274 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| || || || || | |||| |||||||| ||||| ||||| Sbjct 275 AGGGTGCGGCCATCCTCCAGCTGCTTCCCTGCGAAGATGAGACGCTGCTGGTCAGGAGGA 334 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| || | || | |||| ||| || | || |||| ||| | Sbjct 335 ATTCCTTCCTTGTC-CTGGATCTTGGCCTTAACGTTG-TCAATAGTATCGGAACTCTCAA 392 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || ||||| ||||| || || ||||||||||| Sbjct 393 CCTCCAAGGTGATGGTCTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 441 Score = 82.4 bits (90), Expect = 8e-11 Identities = 151/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 138399 ACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGA 138458 ||||| || ||||| | | |||||||| || |||||||||||| || || | Sbjct 454 ACGCAGTACCAAATGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTCCTACC 513 Query 138459 GTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTT 138518 ||||| || || ||||| | |||| | ||||| ||||| || || ||||| || || Sbjct 514 ATCCTCAAGCTGCTTACCAGCGAAGATCAACCGCTGCTGGTCTGGCGGGATACCCTCCTT 573 Query 138519 GTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTC 138576 ||| ||| | || | || | ||| || | ||| |||| ||||| ||||| | || Sbjct 574 GTC-CTGAATCTTAGCCTTGACGTTG-TCGATGGTATCGGAAGACTCGACCTCTAGGGTA 631 Query 138577 AGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || ||||| || || || || || || |||||||| Sbjct 632 ATGGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 669 >seq59239 Length=983 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | ||| | ||| | | |||||||| || |||||||||||| Sbjct 348 CCACCACGCAGACGGAGAACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCA 407 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| || || || || | |||| |||||||| ||||| ||||| Sbjct 408 AGGGTGCGGCCATCCTCCAGCTGCTTCCCTGCGAAGATGAGACGCTGCTGGTCAGGAGGA 467 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| || | || | |||| ||| || | || |||| ||| | Sbjct 468 ATTCCTTCCTTGTC-CTGGATCTTGGCCTTAACGTTG-TCAATAGTATCGGAACTCTCAA 525 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || ||||| ||||| || || ||||||||||| Sbjct 526 CCTCCAAGGTGATGGTCTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 574 Score = 82.4 bits (90), Expect = 8e-11 Identities = 151/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 138399 ACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGA 138458 ||||| || ||||| | | |||||||| || |||||||||||| || || | Sbjct 587 ACGCAGTACCAAATGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTCCTACC 646 Query 138459 GTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTT 138518 ||||| || || ||||| | |||| | ||||| ||||| || || ||||| || || Sbjct 647 ATCCTCAAGCTGCTTACCAGCGAAGATCAACCGCTGCTGGTCTGGCGGGATACCCTCCTT 706 Query 138519 GTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTC 138576 ||| ||| | || | || | ||| || | ||| |||| ||||| ||||| | || Sbjct 707 GTC-CTGAATCTTAGCCTTGACGTTG-TCGATGGTATCGGAAGACTCGACCTCTAGGGTA 764 Query 138577 AGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || ||||| || || || || || || |||||||| Sbjct 765 ATGGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495605385802080