Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq85017 95.1 9e-15 seq59239 95.1 9e-15 seq50989 95.1 9e-15 >seq85017 Length=850 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | ||| | ||| || ||||| || || || |||||||| ||| Sbjct 215 CCACCACGCAGACGGAGAACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCA 274 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | || || | || || || ||| | || | |||||| ||||| ||| Sbjct 275 AGGGTGCGGCCATCCTCCAGCTGCTTCCCTGCGAAGATGAGACGCTGCTGGTCAGGAGGA 334 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||||||||| || ||| || || | || ||||||||| | | || || Sbjct 335 ATTCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCAATAGTATCGGAACTCTCAACC 394 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || ||||| ||||| || || || ||||| || || ||||| ||||| Sbjct 395 TCCAAGGTGATGGTCTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 441 >seq59239 Length=983 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | ||| | ||| || ||||| || || || |||||||| ||| Sbjct 348 CCACCACGCAGACGGAGAACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCA 407 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | || || | || || || ||| | || | |||||| ||||| ||| Sbjct 408 AGGGTGCGGCCATCCTCCAGCTGCTTCCCTGCGAAGATGAGACGCTGCTGGTCAGGAGGA 467 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||||||||| || ||| || || | || ||||||||| | | || || Sbjct 468 ATTCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCAATAGTATCGGAACTCTCAACC 527 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || ||||| ||||| || || || ||||| || || ||||| ||||| Sbjct 528 TCCAAGGTGATGGTCTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 574 >seq50989 Length=854 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | ||| | ||| || ||||| || || || |||||||| ||| Sbjct 19 CCACCACGCAGACGGAGAACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCA 78 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | || || | || || || ||| | || | |||||| ||||| ||| Sbjct 79 AGGGTGCGGCCATCCTCCAGCTGCTTCCCTGCGAAGATGAGACGCTGCTGGTCAGGAGGA 138 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||||||||| || ||| || || | || ||||||||| | | || || Sbjct 139 ATTCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCAATAGTATCGGAACTCTCAACC 198 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || ||||| ||||| || || || ||||| || || ||||| ||||| Sbjct 199 TCCAAGGTGATGGTCTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356930668801490