Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq44759 107 2e-18 seq85017 104 2e-17 seq59239 104 2e-17 seq50989 104 2e-17 seq87603 100 3e-16 seq50088 100 3e-16 >seq44759 Length=4973 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | ||| | | || ||||||| || || ||||||||||| || || ||| Sbjct 4445 ATGCCTCCCCTGAGACGAAGGACAAGATGCAAGGTCGACTCCTTTTGGATGTTGTAGTCG 4386 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || || ||| ||||| || || || ||| | || | || ||||||||||| Sbjct 4385 GCCAGCGTCCTACCATCTTCCAACTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGT 4326 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 |||||||| || || || || || || |||| || | || | |||||| |||||||| Sbjct 4325 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGAAGACTC 4267 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | ||||||||||| || || || || || || ||||| Sbjct 4266 CACCTCAAGGGTGATGGTTTTGCCGGTGAGCGTCTTCACGAAGATCTGCAT 4216 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||||| |||||||||||| || || || || ||| | |||| ||| ||| Sbjct 4880 ACCAGATGCAACGTTGATTCCTTCTGAATGTTGTAGTCGGCTAGGGTTCGGCCATCCTCC 4821 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || || || ||| | || | || ||||| || || || || ||||| || || || Sbjct 4820 AGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCAGGTGGGATACCTTCCTTGTCCTGG 4761 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || || |||| || | || | |||||||||| ||| ||||| | || | || || Sbjct 4760 ATCTTGGCCTTGA-CGTTGTCAATGGTGTCGGAACTCTCAACTTCCAACGTGATGGTCTT 4702 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| ||||| || || |||||||| Sbjct 4701 CCCAGTTAGGGTTTTGACGAAGATTTGCAT 4672 >seq85017 Length=850 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | ||| | || || | ||| ||||| || ||||| ||||| || || ||| Sbjct 440 ATCCCTCCCCTGAGACGCAGTACCAAATGAAGCGTAGACTCCTTCTGGATGTTGTAGTCG 499 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || || ||| || | || || || ||| | ||||| || |||||||| ||| Sbjct 500 GCCAGCGTCCTACCATCCTCAAGCTGCTTACCAGCGAAGATCAACCGCTGCTGGTCTGGC 559 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || || || || || ||||| || |||| || | || | ||| ||||||||||| Sbjct 560 GGGATACCCTCCTTGTCCTGAATCTTAGCCTTGA-CGTTGTCGATGGTATCGGAAGACTC 618 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || || |||| || || || ||||| || || || || || ||||| Sbjct 619 GACCTCTAGGGTAATGGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 669 >seq59239 Length=983 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | ||| | || || | ||| ||||| || ||||| ||||| || || ||| Sbjct 573 ATCCCTCCCCTGAGACGCAGTACCAAATGAAGCGTAGACTCCTTCTGGATGTTGTAGTCG 632 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || || ||| || | || || || ||| | ||||| || |||||||| ||| Sbjct 633 GCCAGCGTCCTACCATCCTCAAGCTGCTTACCAGCGAAGATCAACCGCTGCTGGTCTGGC 692 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || || || || || ||||| || |||| || | || | ||| ||||||||||| Sbjct 693 GGGATACCCTCCTTGTCCTGAATCTTAGCCTTGA-CGTTGTCGATGGTATCGGAAGACTC 751 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || || |||| || || || ||||| || || || || || ||||| Sbjct 752 GACCTCTAGGGTAATGGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 802 >seq50989 Length=854 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | ||| | || || | ||| ||||| || ||||| ||||| || || ||| Sbjct 244 ATCCCTCCCCTGAGACGCAGTACCAAATGAAGCGTAGACTCCTTCTGGATGTTGTAGTCG 303 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || || ||| || | || || || ||| | ||||| || |||||||| ||| Sbjct 304 GCCAGCGTCCTACCATCCTCAAGCTGCTTACCAGCGAAGATCAACCGCTGCTGGTCTGGC 363 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || || || || || ||||| || |||| || | || | ||| ||||||||||| Sbjct 364 GGGATACCCTCCTTGTCCTGAATCTTAGCCTTGA-CGTTGTCGATGGTATCGGAAGACTC 422 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || || |||| || || || ||||| || || || || || ||||| Sbjct 423 GACCTCTAGGGTAATGGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 473 >seq87603 Length=1014 Score = 100 bits (110), Expect = 3e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATC 45187 |||||| | ||| ||||| || ||||| || || || || ||| | |||| ||| Sbjct 738 CAACACCAAATGGAGCGTCGACTCCTTCTGAATGTTGTAGTCGGCTAGGGTTCGCCCATC 797 Query 45188 GTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATC 45247 || | || || || || | |||||||| |||||||| ||||||||||| || || || Sbjct 798 CTCGAGCTGCTTCCCGGCAAAGATCAATCGCTGCTGGTCGGGCGGAATGCCCTCCTTGTC 857 Query 45248 TTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCG 45306 || || || |||| || | || | ||||| |||||||| || || | || | || Sbjct 858 CTGGATCTTGGCCTTGA-CGTTGTCGATCGTGTCAGAAGACTCAACCTCCAAGGTGATCG 916 Query 45307 TTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | ||||| ||||| ||||| || || || ||||| Sbjct 917 TCTTGCCAGTTAGGGTTTTCACGAAGATCTGCAT 950 >seq50088 Length=882 Score = 100 bits (110), Expect = 3e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATC 45187 |||||| | ||| ||||| || ||||| || || || || ||| | |||| ||| Sbjct 606 CAACACCAAATGGAGCGTCGACTCCTTCTGAATGTTGTAGTCGGCTAGGGTTCGCCCATC 665 Query 45188 GTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATC 45247 || | || || || || | |||||||| |||||||| ||||||||||| || || || Sbjct 666 CTCGAGCTGCTTCCCGGCAAAGATCAATCGCTGCTGGTCGGGCGGAATGCCCTCCTTGTC 725 Query 45248 TTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCG 45306 || || || |||| || | || | ||||| |||||||| || || | || | || Sbjct 726 CTGGATCTTGGCCTTGA-CGTTGTCGATCGTGTCAGAAGACTCAACCTCCAAGGTGATCG 784 Query 45307 TTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | ||||| ||||| ||||| || || || ||||| Sbjct 785 TCTTGCCAGTTAGGGTTTTCACGAAGATCTGCAT 818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451404781663440