Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq95781 118 1e-21 >seq95781 Length=6618 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 10203 TCAGTAAAGTTCATCCTCTTTGTCAATCTCAACCACACAATCGCTCGTGGGATAAGAAAC 10262 |||| | || || ||||| |||| | || | || | ||||| || ||||||| ||| Sbjct 4859 TCAGAAGAGATCCTCCTCCTTGTGGCTTTCGATAACCAAGTCGCTGGTCGGATAAGCAAC 4918 Query 10263 ACAGGTCAGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGAACGATTGATCGCTTTG 10322 || || || | | ||||||| | | || |||| |||||||| | |||||| ||| Sbjct 4919 GCAAGTGAGGATGTAACCAGCTTTTAATTGACCATCGTCAAGGAAGGTTTGATCTTCTTG 4978 Query 10323 ATCTACCGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCACCAGCTCGGCACGA 10382 | || || || || |||| ||||||||||||| | ||||| | || || |||||||| Sbjct 4979 GTTCACAGTTCCAGAAATGATTTTGCCTGCACAAGTGGAACACGAGCCGGCACGGCACGA 5038 Query 10383 GTAGTTGAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTACTG 10430 ||| ||||| ||||| ||| || || | |||||||||||||| Sbjct 5039 GTATGGCAGGTCCATGCCCTGTTCCTCCGCCACGTCCAGAATGTACTG 5086 Score = 111 bits (122), Expect = 2e-19 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 10210 AGTTCATCCTCTTTGTCAATCTCAACCACACAATCGCTCGTGGGATAAGAAACACAGGTC 10269 ||||| ||||| |||| | | |||| || ||||||||| ||||| | || || || Sbjct 3550 AGTTCTTCCTCCTTGTGAGTTTCAATGACGAGATCGCTCGTCGGATAGGCGACGCAAGTG 3609 Query 10270 AGAAGGAAACCA--GCATCGATCTGGTCATCATCAAGGAACGATTGATCGCTTTGATCTA 10327 || | | | ||| || || |||| |||||||| |||||||| |||| |||||||| Sbjct 3610 AGGACGTAGCCACTGC-TCT-TCTGATCATCATCGAGGAACGAACCATCGGATTGATCTA 3667 Query 10328 CCGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCACCAGCTCGGCACGAGTAGT 10387 | || || |||| || ||| || | || | | || ||||| || ||||||||||| Sbjct 3668 CAGTTCCAGAGACGATTTTCCCCACGCAGGTGCAGCACGCACCGGCACGGCACGAGTATG 3727 Query 10388 TGAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTACTGATCGTC 10436 | ||| ||||| || | || || || ||||||||||||| ||||| Sbjct 3728 GAACGTCGATGCCCGCCGCCTCTGCGGCGTCCAGAATGTACTCGTCGTC 3776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621301153424160