Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq76306 136 5e-27 seq81645 82.4 9e-11 seq53608 82.4 9e-11 seq53607 82.4 9e-11 seq43626 82.4 9e-11 >seq76306 Length=4672 Score = 136 bits (150), Expect = 5e-27 Identities = 119/148 (80%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 |||||| |||||||| || |||||||| || |||||||||| ||||| |||||||| || Sbjct 906 GTGGAGCCCCTCGTCCCGAGAGATGAGCTCGTTCGAGAAGCTTAGACCAGGCATGAGGCC 965 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||| | ||||||||| |||||||| ||||||||||| || ||||| || || Sbjct 966 TCGCTTCTTGAGCCAGAAAATGGCACAAAAGCTTCCAGAGAAGAATATGCCCTCAACGCA 1025 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAG 127678 ||| || || | || | ||||||||| Sbjct 1026 CGCAAAGGCTAGGAGCCTTTCGGCAAAG 1053 >seq81645 Length=1589 Score = 82.4 bits (90), Expect = 9e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 177708 TCACGATGGAAAACTCCGAGGAGTAGATGTTCGTCAACTTGGCACCGTAGCCATTGCGTC 177767 || ||||| ||||||| ||| |||| || | | |||||||||||| |||||||||| Sbjct 389 TCTCGATGATGAACTCCGTCGAGAAGATATTGGCAAGCTTGGCACCGTAACCATTGCGTC 448 Query 177768 CACCAACAATTCTCTTCTTGTTGTCATCGTAGTTTGTACTCGTGAGAAGGTGACCAAAGG 177827 | || || |||||| | | || |||||||| |||| ||||| || || |||||| Sbjct 449 CGCCGGTGGTTTTCTTCTCGGTATCGTCGTAGTTACTACTGGTGAGTAGATGCCCAAAGA 508 Query 177828 TAAGTTCTGG 177837 | | ||||| Sbjct 509 TCATCTCTGG 518 >seq53608 Length=7438 Score = 82.4 bits (90), Expect = 9e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 177708 TCACGATGGAAAACTCCGAGGAGTAGATGTTCGTCAACTTGGCACCGTAGCCATTGCGTC 177767 || ||||| ||||||| ||| |||| || | | |||||||||||| |||||||||| Sbjct 1201 TCTCGATGATGAACTCCGTCGAGAAGATATTGGCAAGCTTGGCACCGTAACCATTGCGTC 1142 Query 177768 CACCAACAATTCTCTTCTTGTTGTCATCGTAGTTTGTACTCGTGAGAAGGTGACCAAAGG 177827 | || || |||||| | | || |||||||| |||| ||||| || || |||||| Sbjct 1141 CGCCGGTGGTTTTCTTCTCGGTATCGTCGTAGTTACTACTGGTGAGTAGATGCCCAAAGA 1082 Query 177828 TAAGTTCTGG 177837 | | ||||| Sbjct 1081 TCATCTCTGG 1072 >seq53607 Length=1316 Score = 82.4 bits (90), Expect = 9e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 177708 TCACGATGGAAAACTCCGAGGAGTAGATGTTCGTCAACTTGGCACCGTAGCCATTGCGTC 177767 || ||||| ||||||| ||| |||| || | | |||||||||||| |||||||||| Sbjct 16 TCTCGATGATGAACTCCGTCGAGAAGATATTGGCAAGCTTGGCACCGTAACCATTGCGTC 75 Query 177768 CACCAACAATTCTCTTCTTGTTGTCATCGTAGTTTGTACTCGTGAGAAGGTGACCAAAGG 177827 | || || |||||| | | || |||||||| |||| ||||| || || |||||| Sbjct 76 CGCCGGTGGTTTTCTTCTCGGTATCGTCGTAGTTACTACTGGTGAGTAGATGCCCAAAGA 135 Query 177828 TAAGTTCTGG 177837 | | ||||| Sbjct 136 TCATCTCTGG 145 >seq43626 Length=2916 Score = 82.4 bits (90), Expect = 9e-11 Identities = 187/279 (67%), Gaps = 2/279 (1%) Strand=Plus/Plus Query 12789 TCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCG 12848 ||||||||||||||||| || | || || || | || || || |||||||| || | Sbjct 1660 TCGAAGCCATCCATCTCCGTGAGAAGCTGGTTCAAAGTCTGCTCCCGTTCATCGTTACCA 1719 Query 12849 GGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATA 12908 | ||| |||| ||||| ||||| || ||||| ||||| | ||| ||||| Sbjct 1720 CCCCCGATACCGGCACCTCGTTGACGTCCGACTGCATCAATCTCGTCCACGAACACGATG 1779 Query 12909 CACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 12968 || ||| | | || || || || | || || ||||| ||||| || || Sbjct 1780 CAAGGTGCACTCTCTTTCGCCTTTTTGAACAAGTCCCGTACTCTAGAAGCACCAACCCCT 1839 Query 12969 ACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACC 13027 || || | ||||||||| | || | | | || | || || |||||| | ||| || Sbjct 1840 ACGAAAACCTCCACAAACTCGGAACCCG-ATATCGAGAAAAATGGGACGCCAGCTTCCCC 1898 Query 13028 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 ||||||||| ||| || ||||| ||||| ||||| || Sbjct 1899 AGCGATGGCTTTGGCCAGAAGGGTTTTCCCAGTCCCAGG 1937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 612694962480240