Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq87603 105 3e-17 seq50088 105 3e-17 seq85017 84.2 9e-11 seq59239 84.2 9e-11 seq50989 84.2 9e-11 >seq87603 Length=1014 Score = 105 bits (116), Expect = 3e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || || || || || || || || || || ||||| || ||| Sbjct 722 ATGCAGATTTTCGTCAAGACGCTCACGGGCAAGACAATCACCCTAGAGGTTGAGTCTTCT 663 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| |||||| | | || || || || || ||||| || ||||||||||| || Sbjct 662 GATACCATTGACAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAG 603 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||||| || || | || || || || || ||||| | || |||||||| || || Sbjct 602 CAGCGTTTGATCTTTGCTGGTAAGCAGCTCGAGGATGGTCGTACCTTGGCGGACTACAAC 543 Query 391230 ATTGATAAGGATGCAACACTTCA 391252 ||| | ||||| | || ||||| Sbjct 542 ATTCAGAAGGAGTCCACTCTTCA 520 >seq50088 Length=882 Score = 105 bits (116), Expect = 3e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || || || || || || || || || || ||||| || ||| Sbjct 590 ATGCAGATTTTCGTCAAGACGCTCACGGGCAAGACAATCACCCTAGAGGTTGAGTCTTCT 531 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| |||||| | | || || || || || ||||| || ||||||||||| || Sbjct 530 GATACCATTGACAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAG 471 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||||| || || | || || || || || ||||| | || |||||||| || || Sbjct 470 CAGCGTTTGATCTTTGCTGGTAAGCAGCTCGAGGATGGTCGTACCTTGGCGGACTACAAC 411 Query 391230 ATTGATAAGGATGCAACACTTCA 391252 ||| | ||||| | || ||||| Sbjct 410 ATTCAGAAGGAGTCCACTCTTCA 388 >seq85017 Length=850 Score = 84.2 bits (92), Expect = 9e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || || ||||| || || || || | || ||||| || Sbjct 441 ATGCAGATTTTCGTGAAGACTCTCACTGGAAAGACCATCACCTTGGAGGTTGAGAGTTCC 382 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||| |||| || || || || |||||||||||||||||||| || Sbjct 381 GATACTATTGACAACGTTAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGACCAG 322 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || ||| ||||||| || || || ||||| | || | || || || || Sbjct 321 CAGCGTCTCATCTTCGCAGGGAAGCAGCTGGAGGATGGCCGCACCCTTGCCGACTACAAC 262 Query 391230 ATTGATAAGGA 391240 || | ||||| Sbjct 261 ATCCAGAAGGA 251 >seq59239 Length=983 Score = 84.2 bits (92), Expect = 9e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || || ||||| || || || || | || ||||| || Sbjct 574 ATGCAGATTTTCGTGAAGACTCTCACTGGAAAGACCATCACCTTGGAGGTTGAGAGTTCC 515 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||| |||| || || || || |||||||||||||||||||| || Sbjct 514 GATACTATTGACAACGTTAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGACCAG 455 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || ||| ||||||| || || || ||||| | || | || || || || Sbjct 454 CAGCGTCTCATCTTCGCAGGGAAGCAGCTGGAGGATGGCCGCACCCTTGCCGACTACAAC 395 Query 391230 ATTGATAAGGA 391240 || | ||||| Sbjct 394 ATCCAGAAGGA 384 >seq50989 Length=854 Score = 84.2 bits (92), Expect = 9e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || || ||||| || || || || | || ||||| || Sbjct 245 ATGCAGATTTTCGTGAAGACTCTCACTGGAAAGACCATCACCTTGGAGGTTGAGAGTTCC 186 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||| |||| || || || || |||||||||||||||||||| || Sbjct 185 GATACTATTGACAACGTTAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGACCAG 126 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || ||| ||||||| || || || ||||| | || | || || || || Sbjct 125 CAGCGTCTCATCTTCGCAGGGAAGCAGCTGGAGGATGGCCGCACCCTTGCCGACTACAAC 66 Query 391230 ATTGATAAGGA 391240 || | ||||| Sbjct 65 ATCCAGAAGGA 55 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1973037304442712