Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq76306 150 2e-31 seq52188 96.9 4e-15 seq43626 87.8 2e-12 >seq76306 Length=4672 Score = 150 bits (166), Expect = 2e-31 Identities = 122/148 (82%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232 |||||| || | ||| | || |||||||| |||||||| || ||||||||||| ||| Sbjct 1053 CTTTGCCGAAAGGCTCCTAGCCTTTGCGTGCGTTGAGGGCATATTCTTCTCTGGAAGCTT 994 Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292 || || |||| ||||||||||||||||| |||||||| ||||| ||||||| ||||| Sbjct 993 TTGTGCCATTTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGTCTAAGCTTCTCGAACGA 934 Query 102293 GCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||| |||||||| |||||||| |||||| Sbjct 933 GCTCATCTCTCGGGACGAGGGGCTCCAC 906 >seq52188 Length=8849 Score = 96.9 bits (106), Expect = 4e-15 Identities = 215/321 (67%), Gaps = 14/321 (4%) Strand=Plus/Plus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTG 16032 || ||||||||||| || | |||||||| || || || || ||||| ||||| | | | Sbjct 3498 AATCCATCCATCTCCGTGAGCAGCTGGTTGATCGTCTGCTCGCGTTCGTCATTTCCACCG 3557 Query 16033 GCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 || |||||| | | ||| | ||||| ||||| |||||||| ||||| || |||| Sbjct 3558 CCAAG--ACCAGCGCCTCTCTGCCTCCCCACAGCATCGATCTCATCTATGAAAACAATGC 3615 Query 16093 ATGG-----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCAC 16147 | || ||||||| || || || || ||||| || || || || || Sbjct 3616 AGGGAGCCTTTGATTTG-----GCCTTCTCGAACAGGTCCCGGACCCGAGAAGCACCGAC 3670 Query 16148 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 16207 ||| || |||| ||| || || | | || | ||| || ||| ||||| | ||| Sbjct 3671 ACCGACGAACAGCTCGACGAACTCGGACGCCGCACACGAGAAGAACGGGACGCCGGCTTC 3730 Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 16267 ||| || | ||||| || || | ||||| || || ||||| ||| |||| ||| Sbjct 3731 ACCGGCTACTGCTCGAGCCAGCAACGTCTTCCCAGTTCCTGGAGGACCAACGAGCAGGCA 3790 Query 16268 ACCTCGTGGAATCTTGGCGCC 16288 ||| ||||||||||| || Sbjct 3791 ACCCTTGGGAATCTTGGCACC 3811 >seq43626 Length=2916 Score = 87.8 bits (96), Expect = 2e-12 Identities = 210/315 (67%), Gaps = 2/315 (1%) Strand=Plus/Plus Query 15936 TTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAA 15995 || |||||||| ||||| | | || || | | || || ||||||||||| || | | Sbjct 1624 TTGGTTGCGGCAATGACTATCACCCCGGTGTTGCCCTCGAAGCCATCCATCTCCGTGAGA 1683 Query 15996 AGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGC 16055 |||||||| | ||| || ||||||||||| || | | ||| |||| ||||| Sbjct 1684 AGCTGGTTCAAAGTCTGCTCCCGTTCATCGTTACCACCCCCGATACCGGCACCTCGTTGA 1743 Query 16056 TTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACT 16115 ||| || ||||||||||| || | ||| |||||||| ||| | | || || | Sbjct 1744 CGTCCGACTGCATCAATCTCGTCCACGAACACGATGCAAGGTGCACTCTCTTTCGCCTTT 1803 Query 16116 TCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCG 16175 | || | |||||||| | || || || || || || | ||||||||| | | Sbjct 1804 TTGAACAAGTCCCGTACTCTAGAAGCACCAACCCCTACGAAAACCTCCACAAACTCGGAA 1863 Query 16176 GCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGT 16234 | | | || | || || ||||| || ||| || || |||||| ||| ||||| || Sbjct 1864 CCCG-ATATCGAGAAAAATGGGACGCCAGCTTCCCCAGCGATGGCTTTGGCCAGAAGGGT 1922 Query 16235 CTTACCCGTACCTGG 16249 || || || || || Sbjct 1923 TTTCCCAGTCCCAGG 1937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 619920583618080