Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq64362 131 2e-25 seq76306 123 3e-23 seq52188 102 1e-16 seq43626 96.9 4e-15 seq103020 87.8 2e-12 >seq64362 Length=3819 Score = 131 bits (144), Expect = 2e-25 Identities = 314/465 (68%), Gaps = 15/465 (3%) Strand=Plus/Minus Query 11497 ATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTT 11556 |||| ||||||||||| || || || || | || | ||||||||| || | ||| Sbjct 2465 ATCTGCCGATCGAAACGTCCCGGACGAAGCAACGCCTTATCAAGAATGTCCGGCCTGTTG 2406 Query 11557 GTAGCGGCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGC 11616 ||| | || | || || | ||| | | | | ||||||||||||||| || ||| Sbjct 2405 GTACCCGCGAGCACAACGACGCCCGCCGTCGTCCCAAAACCGTCCATTTCTACAAGGAGC 2346 Query 11617 TGGTTGATCGTCTGTTCACGCTCATCGTTGGAG--GGCATA-CCACCTGCCGAACGCTTC 11673 ||||||| ||| ||||| |||||||||| ||| | || ||| | ||| Sbjct 2345 TGGTTGAGCGTGCTCTCACGTTCATCGTTGGCTCCGGCGAATCCTCCTCGCCCACGGGCA 2286 Query 11674 TTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCA--CGTGCCT 11731 |||| |||||| ||||| |||||||||| |||| ||| | || | || |||| Sbjct 2285 CGGCCGATAGCGTCGATCTCGTCGATGAATATAATACTCGGA--GATGACTGCCGGGCCT 2228 Query 11732 GTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG 11791 | | || || || || |||||| || ||| || || ||||||||||| | ||||| Sbjct 2227 GCGCAAAGAGGTCTCGGACACGCGACGGTCCGACTCCGACGAACATCTCCATGAAGT--- 2171 Query 11792 CGG--CAGAACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGA 11848 ||| | | | || | ||| ||||| || |||||| ||| | || ||||||| Sbjct 2170 CGGATCCGCTGATGGAGAGGAACGGAACGGCAGCCTCACCGGCGGTAGCCTTCGCGAGGA 2111 Query 11849 GAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCA-CCA 11907 | ||||| || |||||||| | || |||| | ||||| ||||||||| ||| ||| Sbjct 2110 GTGTCTTCCCGGTACCAGGCGGGCCGACGAGCAATGCGCCCTTGGGGATCTTCGCACCCA 2051 Query 11908 CTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCC 11952 ||| ||| || ||| ||| | ||||| | ||| | |||| Sbjct 2050 GATCC-TCGTACTTCTTAGGGTTCCTCAGGAAATGCACGAACTCC 2007 >seq76306 Length=4672 Score = 123 bits (136), Expect = 3e-23 Identities = 115/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || ||||| || ||||||||||||||||| || ||||| || ||||||||||| ||| Sbjct 907 TGGAGCCCCTCGTCCCGAGAGATGAGCTCGTTCGAGAAGCTTAGACCAGGCATGAGGCCT 966 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| || ||||||||||| |||||||| ||||| |||||||| || || Sbjct 967 CGCTTCTTGAGCCAGAAAATGGCACAAAAGCTTCCAGAGAAGAATATGCCCTCAACGCAC 1026 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAA 119653 || || || | || | || ||||| Sbjct 1027 GCAAAGGCTAGGAGCCTTTCGGCAAA 1052 >seq52188 Length=8849 Score = 102 bits (112), Expect = 1e-16 Identities = 306/468 (65%), Gaps = 6/468 (1%) Strand=Plus/Plus Query 11505 ATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGC 11564 |||||| || || || ||||| ||||| || |||| || | ||| ||||| || Sbjct 3410 ATCGAATCGGCCAGGCCGGAGGAGAGCCGAGTCGAGAACGTCAGGCCTGTTGGTAGCCGC 3469 Query 11565 AATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGAT 11624 | |||| | ||| | | | ||| || ||||| || ||||| ||||||||||| Sbjct 3470 CAGAACTATGACTCCACTATTACCCGAGAATCCATCCATCTCCGTGAGCAGCTGGTTGAT 3529 Query 11625 CGTCTGTTCACGCTCATCGTTGG-AGGGC--ATACCACCTGCCGAACGCTTCTTACCGAC 11681 |||||| || || || || || | || | |||| | ||| | || | | || || Sbjct 3530 CGTCTGCTCGCGTTCGTCATTTCCACCGCCAAGACCAGC-GCCT--CTCTGCCTCCCCAC 3586 Query 11682 AGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAG 11741 ||| || |||||||| ||||| || || || || || | |||| ||||| || Sbjct 3587 AGCATCGATCTCATCTATGAAAACAATGCAGGGAGCCTTTGATTTGGCCTTCTCGAACAG 3646 Query 11742 TTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAACA 11801 || || || || || || ||||| ||||||| ||| ||||| | | || | ||| Sbjct 3647 GTCCCGGACCCGAGAAGCACCGACACCGACGAACAGCTCGACGAACTCGGACGCCGCACA 3706 Query 11802 CTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGT 11861 | | ||| || || | ||||| || | |||||||| || | ||||| || || Sbjct 3707 CGAGAAGAACGGGACGCCGGCTTCACCGGCTACTGCTCGAGCCAGCAACGTCTTCCCAGT 3766 Query 11862 ACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAGTAGCG 11921 || || | |||| |||| ||| || ||| ||||||||||| | ||| Sbjct 3767 TCCTGGAGGACCAACGAGCAGGCAACCCTTGGGAATCTTGGCACCGAGAGCTGTGTACTT 3826 Query 11922 CTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969 || || ||||| | ||| ||||| | |||| ||| || |||||| Sbjct 3827 GTCCGGATTCTTCAAGAAATCCACTACTTCCTGAAGCTCGAGCTTGGC 3874 >seq43626 Length=2916 Score = 96.9 bits (106), Expect = 4e-15 Identities = 324/501 (65%), Gaps = 14/501 (3%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || |||||||| || || ||||| | ||| | || | ||| ||| | | ||| || ||| Sbjct 1573 CGGTCGAAACGTCCCGGACGGAGCAACGCAGCGTCCAAAATGTCGGCTCTGTTGGTTGCG 1632 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 |||||||||| | || || | ||||| || ||||| || |||||||||||||| Sbjct 1633 GCAATGACTATCACCCCGGTGTTGCCCTCGAAGCCATCCATCTCCGTGAGAAGCTGGTTC 1692 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATACC----ACCTGCCGAACGCTTCTTACC 11678 | ||||| || || |||||||| || || ||| || || | || Sbjct 1693 AAAGTCTGCTCCCGTTCATCGTT----ACCACCCCCGATACCGGCACCTCGTTGACGTCC 1748 Query 11679 GACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAA 11738 ||| || |||||||| || | ||| ||||| || ||| | | |||| || ||| Sbjct 1749 GACTGCATCAATCTCGTCCACGAACACGATGCAAGGTGCACTCTCTTTCGCCTTTTTGAA 1808 Query 11739 AAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGA 11798 | || ||||| | || ||||| |||||||| | ||| || || | | | || Sbjct 1809 CAAGTCCCGTACTCTAGAAGCACCAACCCCTACGAAAACCTCCACAAACTCGGAACCCGA 1868 Query 11799 ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACC 11858 | | || || || || || |||||||||||| || || || || || || Sbjct 1869 TATCGAGAAAAATGGGACGCCAGCTTCCCCAGCGATGGCTTTGGCCAGAAGGGTTTTCCC 1928 Query 11859 CGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGC-ACCACTTCCAAAGT 11917 || ||||| | ||| | || | | || ||||||||| || |||| | ||| Sbjct 1929 AGTCCCAGGAGGGCCAACCAGCAACACACCCTTGGGGATCTTCGCTCCCACGGC---AGT 1985 Query 11918 --AGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTC 11975 | | ||||||| |||| | || || ||||| ||| | || | |||||| ||| Sbjct 1986 AAACCTCTCAGGCCTCTTCAAAAACTCAACAATTTCCATGAACTCTTGCTTGGCCTCGTC 2045 Query 11976 GATACCCTCAACATCGGTGAA 11996 || ||| |||| ||| |||| Sbjct 2046 GACACCAGCAACGTCGCTGAA 2066 >seq103020 Length=5539 Score = 87.8 bits (96), Expect = 2e-12 Identities = 168/247 (68%), Gaps = 2/247 (1%) Strand=Plus/Plus Query 110969 CAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTG 111028 ||| || ||| | |||||| |||||| || || ||||| | ||||| | || |||| Sbjct 4641 CAAGTAAAAAAAACGAAGAC--CTGAGGGCGTGGTGTTCCAGAGTTGAACAACGTCGGTG 4698 Query 111029 TCGCATGAATGAACAGACCTTGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACAT 111088 ||||| ||||| | ||| |||||| | ||| || || ||||| | | Sbjct 4699 AAGCATGGGTGAACCATCGTTGAGACATCAAATGGTACGTTCTGATGGCGGATTCGATGT 4758 Query 111089 CTTTACCGTGAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCT 111148 ||| ||| |||||||||| ||||||||||| ||||| ||||||| | |||| | | Sbjct 4759 CTTGCTTGTGTATACCAATGGAAACTCGCATGAGCATATGTTGAGGCCTCTCGACGACCC 4818 Query 111149 TTCCATCAACACGCTGAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTATCCAAAAT 111208 |||| | || ||||||| ||| ||||| |||| |||||||| | | | Sbjct 4819 TTCCGTTCACCTTGAGAAGGTACGATCGCTCGAGGGTTTTGAAGCCAAAGTAGTCGTAGT 4878 Query 111209 CGAAATC 111215 ||||||| Sbjct 4879 CGAAATC 4885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588196239949200