Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq52188 100 3e-16 >seq52188 Length=8849 Score = 100 bits (110), Expect = 3e-16 Identities = 216/321 (67%), Gaps = 14/321 (4%) Strand=Plus/Plus Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTG 9339 || ||||||||||| || | || ||||| || || || || ||||| ||||| | | | Sbjct 3498 AATCCATCCATCTCCGTGAGCAGCTGGTTGATCGTCTGCTCGCGTTCGTCATTTCCACCG 3557 Query 9340 GCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATAC 9399 || |||||| | | ||| | ||||| ||||| |||||||| ||||| ||||| | Sbjct 3558 CCAAG--ACCAGCGCCTCTCTGCCTCCCCACAGCATCGATCTCATCTATGAAAACAATGC 3615 Query 9400 ATGG-----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCAC 9454 | || ||||||| ||| | || || || || || |||| || || || Sbjct 3616 AGGGAGCCTTTGATTT-----GGCCTTCTCGAACAGGTCCCGGACCCGAGAAGCACCGAC 3670 Query 9455 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 9514 ||| || |||| ||| || || | | || | ||| || ||| ||||| | ||| Sbjct 3671 ACCGACGAACAGCTCGACGAACTCGGACGCCGCACACGAGAAGAACGGGACGCCGGCTTC 3730 Query 9515 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 9574 ||| || | ||||| || || | ||||| || || ||||| ||| |||| ||| Sbjct 3731 ACCGGCTACTGCTCGAGCCAGCAACGTCTTCCCAGTTCCTGGAGGACCAACGAGCAGGCA 3790 Query 9575 ACCCCGTGGAATCTTGGCGCC 9595 |||| ||||||||||| || Sbjct 3791 ACCCTTGGGAATCTTGGCACC 3811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589199709669360