Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq95781 96.9 4e-15 seq92617 91.5 2e-13 >seq95781 Length=6618 Score = 96.9 bits (106), Expect = 4e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 171901 AGTATCTTCTGGACGCTGCAGATGAAGCGGGGGTTGATGCTCCATATTCCTGCCGTGCCG 171960 |||| |||||||||| ||||| | ||||| | || | |||||| || |||||||||| Sbjct 3769 AGTACATTCTGGACGCCGCAGAGGCGGCGGGCATCGACGTTCCATACTCGTGCCGTGCCG 3710 Query 171961 GTGCCTGTTCCAGCTGTGCTGGTAAACTTGAGAGTGGTACGGTAGATCAGTCAGAGCAAT 172020 |||| || | || ||| | || ||| | | ||| || |||||||| || || | Sbjct 3709 GTGCGTGCTGCACCTGCGTGGGGAAAATCGTCTCTGGAACTGTAGATCAATCCGATGGTT 3650 Query 172021 CTTTCCTTGATGATGATCAAATGGACGCAGGATTCGTTCTGACCTGTGTTGCTTATCCTA 172080 | ||||| ||||||||||| | | | || | ||| || || || || || ||||| | Sbjct 3649 CGTTCCTCGATGATGATCAGAAGAGCAGTGGCTACGTCCTCACTTGCGTCGCCTATCCGA 3590 Query 172081 CAAGCGAT 172088 | |||||| Sbjct 3589 CGAGCGAT 3582 >seq92617 Length=5211 Score = 91.5 bits (100), Expect = 2e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 171909 CTGGACGCTGCAGATGAAGCGGGGGTTGATGCTCCATATTCCTGCCGTGCCGGTGCCTGT 171968 ||||||||||| || || || ||| | || || ||||| ||||| || || | || Sbjct 3620 CTGGACGCTGCGGAAGAGGCCGGGCTGGACCTGCCTTATTCTTGCCGCGCGGGGTCGTGC 3679 Query 171969 TCCAGCTGTGCTGGTAAACTTGAGAGTGGTACGGTAGATCAGTCAGAGCAATCTTTCCTT 172028 || || | || || ||||||| || ||||| || || ||||| ||||| Sbjct 3680 TCGTCATGCACCGGCAAGGTTGAGAGCGGAACGGTGGACCAAGAGGAGCAGAGCTTCCTC 3739 Query 172029 GATGATGATCAAATGGACGCAGGATTCGTTCTGACCTGTGTTGCTTATCCTACAAGCGAT 172088 || || || || ||||| || || ||||| || ||||| ||||||||||| ||||||||| Sbjct 3740 GACGACGACCAGATGGAGGCCGGCTTCGTGCTCACCTGCGTTGCTTATCCAACAAGCGAT 3799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 609588680416560