Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq87603 114 8e-21 seq50088 114 8e-21 seq102373 98.7 6e-16 seq44759 93.3 3e-14 seq85017 91.5 1e-13 seq59239 91.5 1e-13 seq50989 91.5 1e-13 >seq87603 Length=1014 Score = 114 bits (126), Expect = 8e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||| | | ||| ||||| || | || || ||||||||||| ||||| | Sbjct 724 CCACCCCTAAGACGCAACACCAAATGGAGCGTCGACTCCTTCTGAATGTTGTAGTCGGCT 783 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| |||| |||| || ||||| || |||||||| || | ||| |||||||| |||| Sbjct 784 AGGGTTCGCCCATCCTCGAGCTGCTTCCCGGCAAAGATCAATCGCTGCTGGTCGGGCGGA 843 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||||||||| ||||| |||||| | |||| ||| | |||||| Sbjct 844 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCAGAAGACTCAACC 903 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | ||| || || || || || || || ||||| |||||||||||| Sbjct 904 TCCAAGGTGATCGTCTTGCCAGTTAGGGTTTTCACGAAGATCTGCATA 951 Score = 89.7 bits (98), Expect = 3e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| |||| ||| || ||||||||||| ||||||| | | | || |||| || Sbjct 514 ACCAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGCCAAGGTACGACCATCCTCG 573 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || | || |||||||| | || | ||||||||||| Sbjct 574 AGCTGCTTACCAGCAAAGATCAAACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGG 633 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| ||||| | || | ||| | |||||| || | ||| || || || Sbjct 634 ATCTTAGCCTTGACATTGTCAATGGTATCAGAAGACTCAACCTCTAGGGTGATTGTCTTG 693 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||||||| ||||| || || |||||||| Sbjct 694 CCCGTGAGCGTCTTGACGAAAATCTGCAT 722 >seq50088 Length=882 Score = 114 bits (126), Expect = 8e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||| | | ||| ||||| || | || || ||||||||||| ||||| | Sbjct 592 CCACCCCTAAGACGCAACACCAAATGGAGCGTCGACTCCTTCTGAATGTTGTAGTCGGCT 651 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| |||| |||| || ||||| || |||||||| || | ||| |||||||| |||| Sbjct 652 AGGGTTCGCCCATCCTCGAGCTGCTTCCCGGCAAAGATCAATCGCTGCTGGTCGGGCGGA 711 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||||||||| ||||| |||||| | |||| ||| | |||||| Sbjct 712 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCAGAAGACTCAACC 771 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | ||| || || || || || || || ||||| |||||||||||| Sbjct 772 TCCAAGGTGATCGTCTTGCCAGTTAGGGTTTTCACGAAGATCTGCATA 819 Score = 89.7 bits (98), Expect = 3e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| |||| ||| || ||||||||||| ||||||| | | | || |||| || Sbjct 382 ACCAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGCCAAGGTACGACCATCCTCG 441 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || | || |||||||| | || | ||||||||||| Sbjct 442 AGCTGCTTACCAGCAAAGATCAAACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGG 501 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| ||||| | || | ||| | |||||| || | ||| || || || Sbjct 502 ATCTTAGCCTTGACATTGTCAATGGTATCAGAAGACTCAACCTCTAGGGTGATTGTCTTG 561 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||||||| ||||| || || |||||||| Sbjct 562 CCCGTGAGCGTCTTGACGAAAATCTGCAT 590 >seq102373 Length=7923 Score = 98.7 bits (108), Expect = 6e-16 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | ||| ||||| |||| |||||||| || || || || Sbjct 7735 TCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGTCCATCCTCCAGCTGCTTGCCCGCGAAG 7794 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || ||||| || | || | ||||||||||| ||||| |||||| Sbjct 7795 ATCAATCTCTGCTGATCCGGAGGAATGCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTG 7854 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | |||||| || | ||| ||||| || ||||||||||||||||| Sbjct 7855 TCAATGGTATCCGAAGACTCAACCTCTAGGGTAATGGTCTTACCCGTGAGAGTCTTCACG 7914 Query 34971 AAGATCTGC 34979 ||||| ||| Sbjct 7915 AAGATTTGC 7923 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/215 (70%), Gaps = 12/215 (6%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| |||| ||| || ||||||||||| ||||||| | | | || |||| ||| Sbjct 7489 ACCAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGCTAAGGTACGACCATCCTCC 7548 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | ||| || |||||||| || | || ||||| || | || | ||||||||||| Sbjct 7549 AACTGCTTCCCGGCAAAGATCAAACGCTGCTGATCCGGAGGAATGCCCTCCTTGTCCTGG 7608 Query 34893 ATCTTCTGTTTGACG-----GATGCTAT-CGATTCACCGGCCTCAACATCGACGGTTATG 34946 ||||| |||||| |||| ||| ||| || ||| || || | ||| ||| Sbjct 7609 ATCTTGGCCTTGACGTTGTCGATGGTATCCGA---AC---TCTCGACCTCTAGGGTGATG 7662 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || ||||| || || ||||| ||||||||||| Sbjct 7663 GTCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 7697 >seq44759 Length=4973 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||||| || || ||||| ||||| ||||| | ||| |||| |||| || Sbjct 4652 ACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCATCCTCG 4593 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || | || |||||||| | || | ||||||||||| Sbjct 4592 AGCTGCTTACCAGCAAAGATCAACCGCTGCTGGTCGGGGGGTATACCCTCCTTGTCCTGG 4533 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | |||| || | ||| || |||| ||| ||||| || Sbjct 4532 ATCTTGGCCTTGACGTTATCGATCGTGTCGGAGCTCTCGACCTCGAGGGTGATGGTCTTG 4473 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || ||||| || ||||||||||| Sbjct 4472 CCAGTTAGGGTCTTGACGAAGATCTGCAT 4444 >seq85017 Length=850 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||| | | || ||||| |||| || || ||||| ||||| ||||| | Sbjct 443 CCTCCCCTGAGACGCAGTACCAAATGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGGCC 502 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | | |||| || ||||| || || || || || | || ||||||||| |||| Sbjct 503 AGCGTCCTACCATCCTCAAGCTGCTTACCAGCGAAGATCAACCGCTGCTGGTCTGGCGGG 562 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||||||||| |||||| |||||| | || | || | ||| || Sbjct 563 ATACCCTCCTTGTCCTGAATCTTAGCCTTGACGTTGTCGATGGTATCGGAAGACTCGACC 622 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | ||| ||||| || ||||| || ||||| || |||||||||||| Sbjct 623 TCTAGGGTAATGGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCATA 670 >seq59239 Length=983 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||| | | || ||||| |||| || || ||||| ||||| ||||| | Sbjct 576 CCTCCCCTGAGACGCAGTACCAAATGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGGCC 635 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | | |||| || ||||| || || || || || | || ||||||||| |||| Sbjct 636 AGCGTCCTACCATCCTCAAGCTGCTTACCAGCGAAGATCAACCGCTGCTGGTCTGGCGGG 695 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||||||||| |||||| |||||| | || | || | ||| || Sbjct 696 ATACCCTCCTTGTCCTGAATCTTAGCCTTGACGTTGTCGATGGTATCGGAAGACTCGACC 755 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | ||| ||||| || ||||| || ||||| || |||||||||||| Sbjct 756 TCTAGGGTAATGGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCATA 803 >seq50989 Length=854 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||| | | || ||||| |||| || || ||||| ||||| ||||| | Sbjct 247 CCTCCCCTGAGACGCAGTACCAAATGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGGCC 306 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | | |||| || ||||| || || || || || | || ||||||||| |||| Sbjct 307 AGCGTCCTACCATCCTCAAGCTGCTTACCAGCGAAGATCAACCGCTGCTGGTCTGGCGGG 366 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||||||||| |||||| |||||| | || | || | ||| || Sbjct 367 ATACCCTCCTTGTCCTGAATCTTAGCCTTGACGTTGTCGATGGTATCGGAAGACTCGACC 426 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | ||| ||||| || ||||| || ||||| || |||||||||||| Sbjct 427 TCTAGGGTAATGGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCATA 474 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| | ||| | || |||| || ||||| || || || || Sbjct 511 TCCTTCTGAATGTTGTAGTCGGCTAGGGTACGGCCATCCTCGAGCTGCTTACCAGCGAAG 570 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| ||||| |||||| Sbjct 571 ATGAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 630 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| | ||| || || | ||| ||||| || || || || || || || Sbjct 631 TCAATGGTGTCAGAAGACTCGACCTCAAGGGTGATGGTCTTCCCGGTTAGGGTTTTGACG 690 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 691 AAGATCTGCAT 701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324214554224592