Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq42866 120 2e-21 seq102373 93.3 3e-13 seq52855 86.0 5e-11 >seq42866 Length=5774 Score = 120 bits (132), Expect = 2e-21 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 ||||| || ||||| || || || || |||||||| || ||| |||||| || |||||| Sbjct 4505 GCAGTCATTACTGTGCCCGCGTACTTCAATGACTCCCAGCGTACAGCTACCAAGGATGCT 4564 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || |||||||| || || ||||||||||||||||||| || || |||||||| | ||| Sbjct 4565 GGTCGTATTGCCGGCCTCGATGTTCTTCGTATTATCAACGAGCCAACTGCTGCATCCCTT 4624 Query 550520 GCATATGGACTTGA 550533 || ||||| |||| Sbjct 4625 GCTTATGGTTTTGA 4638 >seq102373 Length=7923 Score = 93.3 bits (102), Expect = 3e-13 Identities = 157/223 (70%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 |||||||||||| || ||||| || || ||| | ||| || ||||| || ||||| Sbjct 7704 CCTGAGACGGAGCACCAGATGGAGCGTCGACTCCTTCTGG--ATGTTGTAGTCGGCTAGG 7761 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 |||| | ||| || || || || || || || || | ||| |||||||| |||||||| Sbjct 7762 GTTCGTCCATCCTCCAGCTGCTTGCCCGCGAAGATCAATCTCTGCTGATCCGGAGGAATG 7821 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTC 563429 || || || ||||| || || || || ||||| ||||| | || | | || Sbjct 7822 CCCTCCTTGTCTTGGATCTTAGCCTTGACGTTGTCAATGGTATCCG-AAGACTCAACCTC 7880 Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGC 563472 || |||| || ||||| || ||||| || ||||| |||||| Sbjct 7881 TAGGGTAATGGTCTTACCCGTGAGAGTCTTCACGAAGATTTGC 7923 >seq52855 Length=1851 Score = 86.0 bits (94), Expect = 5e-11 Identities = 149/215 (69%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 || || ||||| || ||||| || |||||||||||| ||||| | | || ||| Sbjct 428 GGAATTGATTTGGGCACCACCTACTCTTGTGTTGGTGTCTGGCAGCACGACCGTGTGGAA 487 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || || | |||||| || || ||||| || || || || |||||| |||||| ||| || Sbjct 488 ATCATCGTCAATGACCATGGAAACAGGACGACGCCTTCGTATGTTGCTTTCAGGGACACC 547 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAG--CCACTGGTAATCCTACCAATACTA 550175 || | | | |||||||||| || || | || | || || || || || || Sbjct 548 GAGCGTCTCATTGGTGATGCGGCCAAGAACCAGGTTGCAATG--AACCCCGTAAACACGG 605 Query 550176 TTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTT 550210 |||||||||| || | | || |||||||| ||| Sbjct 606 TTTTTGATGCAAAGAGGCTGATCGGAAGAAGGTTT 640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4023694790007860