Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq44759 118 8e-22 seq87603 116 3e-21 seq50088 116 3e-21 seq102373 100 2e-16 seq1166 98.7 8e-16 seq17630 87.8 1e-12 >seq44759 Length=4973 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| || | ||| | || | ||| | ||| || || ||||| || ||||| ||||| Sbjct 4442 CCTCCCCTGAGACGAAGGACAAGATGCAAGGTCGACTCCTTTTGGATGTTGTAGTCGGCC 4383 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || || |||| ||||| |||||||| || || || | |||||| || || || ||| Sbjct 4382 AGCGTCCTACCATCTTCCAACTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGTGGA 4323 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||| || || || || || || || || | || | ||||| || | ||||| Sbjct 4322 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACC 4263 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 ||||| |||| ||||||||||| | || || || || ||||||||| Sbjct 4262 TCAAGGGTGATGGTTTTGCCGGTGAGCGTCTTCACGAAGATCTGCATG 4215 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||||||||| || || || || ||||| ||||| | |||| | |||| || | ||| Sbjct 4646 TGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCATCCTCGAGCTGC 4587 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| ||||| ||||| ||||| || ||||| || || || || || || || || || Sbjct 4586 TTACCAGCAAAGATCAACCGCTGCTGGTCGGGGGGTATACCCTCCTTGTCCTGGATCTTG 4527 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | ||||| || | || || || || |||| || ||||| ||| Sbjct 4526 GCCTTGACGTTATCGATCGTGTCGGAGCTCTCGACCTCGAGGGTGATGGTCTTGCCAGTT 4467 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 | || || || || ||||||||| Sbjct 4466 AGGGTCTTGACGAAGATCTGCATG 4443 >seq87603 Length=1014 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || || | ||| || || ||||| || || || || || || || ||||| ||||| Sbjct 724 CCACCCCTAAGACGCAACACCAAATGGAGCGTCGACTCCTTCTGAATGTTGTAGTCGGCT 783 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||| |||| || | ||||| || ||||| ||||| ||||| || ||||||||| Sbjct 784 AGGGTTCGCCCATCCTCGAGCTGCTTCCCGGCAAAGATCAATCGCTGCTGGTCGGGCGGA 843 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||| || || || || || || || || | || | |||||||| | || || Sbjct 844 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCAGAAGACTCAACC 903 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | |||| ||| ||||| |||| ||||| || || |||||||| Sbjct 904 TCCAAGGTGATCGTCTTGCCAGTTAGGGTTTTCACGAAGATCTGCAT 950 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 |||||| || || || || || || ||||| || || | || | |||| || | || Sbjct 519 ATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGCCAAGGTACGACCATCCTCGAGCTG 578 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 |||||| ||||| ||||||||||| || || || |||||||| || || || || || || Sbjct 579 CTTACCAGCAAAGATCAAACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTT 638 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| | || | || ||||| | || || || || |||| || ||||| || Sbjct 639 AGCCTTGACATTGTCAATGGTATCAGAAGACTCAACCTCTAGGGTGATTGTCTTGCCCGT 698 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 | || || || || ||||||||| Sbjct 699 GAGCGTCTTGACGAAAATCTGCATG 723 >seq50088 Length=882 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || || | ||| || || ||||| || || || || || || || ||||| ||||| Sbjct 592 CCACCCCTAAGACGCAACACCAAATGGAGCGTCGACTCCTTCTGAATGTTGTAGTCGGCT 651 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||| |||| || | ||||| || ||||| ||||| ||||| || ||||||||| Sbjct 652 AGGGTTCGCCCATCCTCGAGCTGCTTCCCGGCAAAGATCAATCGCTGCTGGTCGGGCGGA 711 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||| || || || || || || || || | || | |||||||| | || || Sbjct 712 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCAGAAGACTCAACC 771 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | |||| ||| ||||| |||| ||||| || || |||||||| Sbjct 772 TCCAAGGTGATCGTCTTGCCAGTTAGGGTTTTCACGAAGATCTGCAT 818 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 |||||| || || || || || || ||||| || || | || | |||| || | || Sbjct 387 ATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGCCAAGGTACGACCATCCTCGAGCTG 446 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 |||||| ||||| ||||||||||| || || || |||||||| || || || || || || Sbjct 447 CTTACCAGCAAAGATCAAACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTT 506 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| | || | || ||||| | || || || || |||| || ||||| || Sbjct 507 AGCCTTGACATTGTCAATGGTATCAGAAGACTCAACCTCTAGGGTGATTGTCTTGCCCGT 566 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 | || || || || ||||||||| Sbjct 567 GAGCGTCTTGACGAAAATCTGCATG 591 >seq102373 Length=7923 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 |||||| || || || || || || ||||| || || | || | |||| ||||| || Sbjct 7494 ATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGCTAAGGTACGACCATCCTCCAACTG 7553 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || ||||| ||||||||||| ||||| || |||||||| || || || || || || Sbjct 7554 CTTCCCGGCAAAGATCAAACGCTGCTGATCCGGAGGAATGCCCTCCTTGTCCTGGATCTT 7613 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || || | || | || || || | || || || || |||| || || || || Sbjct 7614 GGCCTTGACGTTGTCGATGGTATCCGAACTCTCGACCTCTAGGGTGATGGTCTTACCCGT 7673 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 || ||||| || || ||||||||| Sbjct 7674 TAGGGTTTTCACGAAGATCTGCATG 7698 >seq1166 Length=240 Score = 98.7 bits (108), Expect = 8e-16 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 101255 CGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA 101314 || || || | |||||| || || || || || || |||||||| || | || || | Sbjct 73 CGCAACACCAGATGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGCCAACGTCCTCCCT 132 Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 || |||||||||||||| || || ||||| ||||| ||||||||||| ||||| || ||| Sbjct 133 TCCTCCAATTGCTTACCAGCGAAGATCAATCGCTGCTGATCGGGCGGGATGCCCTCCTTA 192 Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCAC 101421 || || || || || ||| | || | ||||| || | ||| || Sbjct 193 TCCTGGATCTTGGCCTTGACATTGTCGATCGTGTCGGAGGATTCAAC 239 >seq17630 Length=252 Score = 87.8 bits (96), Expect = 1e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 101255 CGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA 101314 || || || | ||| || || ||||| || || || |||||||| || | || || | Sbjct 131 CGCAACACCAGATGGAGTGTGGATTCCTTCTGGATGTTGTAATCCGCCAACGTCCTCCCG 72 Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 || |||||||||||||| || || ||||| ||||| ||||| || || ||||| || ||| Sbjct 71 TCCTCCAATTGCTTACCAGCGAAGATCAATCGCTGCTGATCCGGTGGGATGCCCTCCTTA 12 Query 101375 TCTTGAATTTT 101385 || || || || Sbjct 11 TCCTGGATCTT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395766873191298