Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq87603 118 8e-22 seq50088 118 8e-22 seq102373 96.9 3e-15 >seq87603 Length=1014 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || |||||||||||||| ||||| ||| || ||||| ||||| || | Sbjct 723 GCCACCCCTAAGACGCAACACCAAATGGAGCGTCGACTCCTTCTGAATGTTGTAGTCGGC 782 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| |||| | || || | |||||| |||||||| |||| |||||| || || | || Sbjct 783 TAGGGTTCGCCCATCCTCGAGCTGCTTCCCGGCAAAGATCAATCGCTGCTGGTCGGGCGG 842 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || |||||||||||| ||||| || || | | | || || | ||| || Sbjct 843 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCAGAAGACTCAAC 902 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || ||||| || || || | ||||| || || |||||||| Sbjct 903 CTCCAAGGTGATCGTCTTGCCAGTTAGGGTTTTCACGAAGATCTGCAT 950 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| ||| || ||| ||| || ||||| ||||| || | | | ||| Sbjct 505 AGGCGGAGCACCAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGCCAAGGTACGA 564 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | ||||||||| ||||| |||| ||||| || || | |||| ||||||| Sbjct 565 CCATCCTCGAGCTGCTTACCAGCAAAGATCAAACGCTGCTGGTCAGGAGGAATGCCCTCC 624 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || | ||| ||||| | || Sbjct 625 TTGTCCTGGATCTTAGCCTTGACATTGTCAATGGTATCAGAAGACTCAACCTCTAGGGTG 684 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || ||||| | || || || ||||||||||| Sbjct 685 ATTGTCTTGCCCGTGAGCGTCTTGACGAAAATCTGCAT 722 >seq50088 Length=882 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || |||||||||||||| ||||| ||| || ||||| ||||| || | Sbjct 591 GCCACCCCTAAGACGCAACACCAAATGGAGCGTCGACTCCTTCTGAATGTTGTAGTCGGC 650 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| |||| | || || | |||||| |||||||| |||| |||||| || || | || Sbjct 651 TAGGGTTCGCCCATCCTCGAGCTGCTTCCCGGCAAAGATCAATCGCTGCTGGTCGGGCGG 710 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || |||||||||||| ||||| || || | | | || || | ||| || Sbjct 711 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCAGAAGACTCAAC 770 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || ||||| || || || | ||||| || || |||||||| Sbjct 771 CTCCAAGGTGATCGTCTTGCCAGTTAGGGTTTTCACGAAGATCTGCAT 818 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| ||| || ||| ||| || ||||| ||||| || | | | ||| Sbjct 373 AGGCGGAGCACCAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGCCAAGGTACGA 432 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | ||||||||| ||||| |||| ||||| || || | |||| ||||||| Sbjct 433 CCATCCTCGAGCTGCTTACCAGCAAAGATCAAACGCTGCTGGTCAGGAGGAATGCCCTCC 492 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || | ||| ||||| | || Sbjct 493 TTGTCCTGGATCTTAGCCTTGACATTGTCAATGGTATCAGAAGACTCAACCTCTAGGGTG 552 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || ||||| | || || || ||||||||||| Sbjct 553 ATTGTCTTGCCCGTGAGCGTCTTGACGAAAATCTGCAT 590 >seq102373 Length=7923 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| ||| || ||| ||| || ||||| ||||| || | || | ||| Sbjct 7480 AGGCGAAGCACCAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGCTAAGGTACGA 7539 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||| |||||||| |||| ||||| ||||||| |||| ||||||| Sbjct 7540 CCATCCTCCAACTGCTTCCCGGCAAAGATCAAACGCTGCTGATCCGGAGGAATGCCCTCC 7599 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || || ||| ||||| | || Sbjct 7600 TTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTATCCGAACTCTCGACCTCTAGGGTG 7659 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || ||||| | ||||| || || |||||||| Sbjct 7660 ATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 7697 Score = 93.3 bits (102), Expect = 3e-14 Identities = 156/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || || | ||||| ||| ||||| ||| || || || ||||| || | Sbjct 7698 GCCACCCCTGAGACGGAGCACCAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGC 7757 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| |||| | || |||| |||||| || || || |||| || ||| ||||||| || Sbjct 7758 TAGGGTTCGTCCATCCTCCAGCTGCTTGCCCGCGAAGATCAATCTCTGCTGATCCGGAGG 7817 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || |||||||||||| ||||| || || | | | || || | ||| || Sbjct 7818 AATGCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTGTCAATGGTATCCGAAGACTCAAC 7877 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGC 48764 ||| | ||||| || || ||||| | ||| || || || || ||| Sbjct 7878 CTCTAGGGTAATGGTCTTACCCGTGAGAGTCTTCACGAAGATTTGC 7923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380445875508222