Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq76306 98.7 2e-15 seq95935 87.8 3e-12 >seq76306 Length=4672 Score = 98.7 bits (108), Expect = 2e-15 Identities = 127/173 (73%), Gaps = 2/173 (1%) Strand=Plus/Minus Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT 25928 |||| ||| |||| |||||||||| ||| || |||||||| || ||| || || Sbjct 1052 TTTGCCGAAAGGCTCCTAGCCTTTGCGTGC-GTTGAGGGCATATTCTTCTCTGGAAGCTT 994 Query 25929 TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGA 25988 | ||||| |||||||||||| || || |||||| || || ||| || ||||| Sbjct 993 TTGTGCCATTTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGTCTAAGCTTCTCGAACGA 934 Query 25989 GCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACA 26041 ||||||| |||||||||| |||||| | || || || ||| ||||||||| Sbjct 933 GCTCATCTCTCGGGACGAGGGGCTCCACTGCGACTTCGCGTGCTTGCTCTACA 881 >seq95935 Length=4297 Score = 87.8 bits (96), Expect = 3e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 221155 GTACAGGTTAGAAGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCT 221214 ||| | ||| || ||| |||| |||| || |||||| ||||| ||||||||| ||| Sbjct 1417 GTAGATGTTTGAGGTGTACGGCTCGAAGCACTCGTTATTGCCGAGGATCTGACTGGTGGA 1358 Query 221215 GGCGGTGGGCATGGGTGCCACCAGCAGACTGTTGCGCAGTCCG 221257 ||||||||||||||||| ||||||||| ||| | || |||| Sbjct 1357 CGCGGTGGGCATGGGTGCAACCAGCAGAGAGTTTCTCACTCCG 1315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 927615079148160