Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq85017 105 4e-17 seq59239 105 4e-17 seq50989 105 4e-17 seq87603 100 2e-15 seq50088 100 2e-15 seq102373 95.1 8e-14 seq42866 95.1 8e-14 >seq85017 Length=850 Score = 105 bits (116), Expect = 4e-17 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| || ||||| || ||| || || | || || || || || || Sbjct 220 ACGCAGACGGAGAACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGGGT 279 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||| || || ||||| || || || || ||||| || || |||||||||||||| Sbjct 280 GCGGCCATCCTCCAGCTGCTTCCCTGCGAAGATGAGACGCTGCTGGTCAGGAGGAATTCC 339 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||||||| || ||||| || || ||||||||||| | | | || | ||| Sbjct 340 TTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCAATAGTATCGGAACTCTCAACCTCCAA 399 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || || || || ||||||||||| |||||||| || Sbjct 400 -GGTGATGGTCTTTCCAGTGAGAGTCTTCACGAAAATCTG 438 >seq59239 Length=983 Score = 105 bits (116), Expect = 4e-17 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| || ||||| || ||| || || | || || || || || || Sbjct 353 ACGCAGACGGAGAACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGGGT 412 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||| || || ||||| || || || || ||||| || || |||||||||||||| Sbjct 413 GCGGCCATCCTCCAGCTGCTTCCCTGCGAAGATGAGACGCTGCTGGTCAGGAGGAATTCC 472 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||||||| || ||||| || || ||||||||||| | | | || | ||| Sbjct 473 TTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCAATAGTATCGGAACTCTCAACCTCCAA 532 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || || || || ||||||||||| |||||||| || Sbjct 533 -GGTGATGGTCTTTCCAGTGAGAGTCTTCACGAAAATCTG 571 >seq50989 Length=854 Score = 105 bits (116), Expect = 4e-17 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| || ||||| || ||| || || | || || || || || || Sbjct 24 ACGCAGACGGAGAACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGGGT 83 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||| || || ||||| || || || || ||||| || || |||||||||||||| Sbjct 84 GCGGCCATCCTCCAGCTGCTTCCCTGCGAAGATGAGACGCTGCTGGTCAGGAGGAATTCC 143 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||||||| || ||||| || || ||||||||||| | | | || | ||| Sbjct 144 TTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCAATAGTATCGGAACTCTCAACCTCCAA 203 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || || || || ||||||||||| |||||||| || Sbjct 204 -GGTGATGGTCTTTCCAGTGAGAGTCTTCACGAAAATCTG 242 >seq87603 Length=1014 Score = 100 bits (110), Expect = 2e-15 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 ||||| ||||| || |||||||| || || || || || || || || | || Sbjct 502 CGAAGGCGGAGCACCAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGCCAAGGTA 561 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | ||| || || ||||| |||||||| || | ||| || || ||||||||||| || Sbjct 562 CGACCATCCTCGAGCTGCTTACCAGCAAAGATCAAACGCTGCTGGTCAGGAGGAATGCCC 621 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAG 480730 |||||||| || ||||| |||||| ||||| ||||||| | | || || || Sbjct 622 TCCTTGTCCTGGATCTTAGCCTTGACATTGTCAATGGTATCAGAAGACTCAA-CCTCTAG 680 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || || || || ||||| ||||| |||||||| || Sbjct 681 GGTGATTGTCTTGCCCGTGAGCGTCTTGACGAAAATCTG 719 >seq50088 Length=882 Score = 100 bits (110), Expect = 2e-15 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 ||||| ||||| || |||||||| || || || || || || || || | || Sbjct 370 CGAAGGCGGAGCACCAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGCCAAGGTA 429 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | ||| || || ||||| |||||||| || | ||| || || ||||||||||| || Sbjct 430 CGACCATCCTCGAGCTGCTTACCAGCAAAGATCAAACGCTGCTGGTCAGGAGGAATGCCC 489 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAG 480730 |||||||| || ||||| |||||| ||||| ||||||| | | || || || Sbjct 490 TCCTTGTCCTGGATCTTAGCCTTGACATTGTCAATGGTATCAGAAGACTCAA-CCTCTAG 548 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || || || || ||||| ||||| |||||||| || Sbjct 549 GGTGATTGTCTTGCCCGTGAGCGTCTTGACGAAAATCTG 587 >seq102373 Length=7923 Score = 95.1 bits (104), Expect = 8e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 |||||||| || ||||| || || || || | || || || ||||| |||| Sbjct 7708 AGACGGAGCACCAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGT 7767 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 ||| || || ||||| || || || || | | || ||||| |||||||| || ||| Sbjct 7768 CCATCCTCCAGCTGCTTGCCCGCGAAGATCAATCTCTGCTGATCCGGAGGAATGCCCTCC 7827 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGT 480733 |||||||| ||||| ||||| ||||| ||||| | | | || || ||||| Sbjct 7828 TTGTCTTGGATCTTAGCCTTGACGTTGTCAATGGTATCCGAAGACTCAA-CCTCTAGGGT 7886 Query 480734 AATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || ||||| ||||||||||| ||||| ||||| Sbjct 7887 AATGGTCTTACCCGTGAGAGTCTTCACGAAGATTTG 7922 >seq42866 Length=5774 Score = 95.1 bits (104), Expect = 8e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 ||||| |||||||| || || || || ||||| || || ||| ||| || || ||||| Sbjct 4505 GCAGTCATTACTGTGCCCGCGTACTTCAATGACTCCCAGCGTACAGCTACCAAGGATGCT 4564 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || | ||||| || || ||||| | |||||||| || || ||||| || || | ||| Sbjct 4565 GGTCGTATTGCCGGCCTCGATGTTCTTCGTATTATCAACGAGCCAACTGCTGCATCCCTT 4624 Query 474857 GCTTATGGTCTTGATAAGAA 474876 ||||||||| |||| | ||| Sbjct 4625 GCTTATGGTTTTGAGAGGAA 4644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3263636034645272