Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq95781 114 1e-20 >seq95781 Length=6618 Score = 114 bits (126), Expect = 1e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 158338 CAGTACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTACTCGTGCCGTGCA 158397 |||||||| || |||| || |||||| ||| | || || |||||||||||||| Sbjct 5086 CAGTACATTCTGGACGTGGCGGAGGAACAGGGCATGGACCTGCCATACTCGTGCCGTGCC 5027 Query 158398 GGCGCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAG 158457 ||| | ||||| | ||||| || ||| || | ||||| || || ||||| || || Sbjct 5026 GGCTCGTGTTCCACTTGTGCAGGCAAAATCATTTCTGGAACTGTGAACCAAGAAGATCAA 4967 Query 158458 TCCTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTCTTATCCT 158517 ||||||| ||||||| ||| | | |||||| ||| || ||||| ||| ||||||| Sbjct 4966 ACCTTCCTTGACGATGGTCAATTAAAAGCTGGTTACATCCTCACTTGCGTTGCTTATCCG 4907 Query 158518 ACAAGTGATTGTGTGATTGAGACTGACAAGGAAGAGGAACT 158558 || || || | || || || | ||||||| ||||| || Sbjct 4906 ACCAGCGACTTGGTTATCGAAAGCCACAAGGAGGAGGATCT 4866 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 158332 GACGACCAGTACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTACTCGTGC 158391 |||||| ||||||| || ||||| || |||| ||||| |||| | ||||||||| Sbjct 3776 GACGACGAGTACATTCTGGACGCCGCAGAGGCGGCGGGCATCGACGTTCCATACTCGTGC 3717 Query 158392 CGTGCAGGCGCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGC 158451 ||||| || || || | | || | ||| ||| |||||||||| || ||||| ||| | Sbjct 3716 CGTGCCGGTGCGTGCTGCACCTGCGTGGGGAAAATCGTCTCTGGAACTGTAGATCAATCC 3657 Query 158452 GACCAGTCCTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTCT 158511 || || ||||| || ||||| || | ||| | | | || ||||| || | Sbjct 3656 GATGGTTCGTTCCTCGATGATGATCAGAAGAGCAGTGGCTACGTCCTCACTTGCGTCGCC 3597 Query 158512 TATCCTACAAGTGATTGTGTGATTGAGACTGACAAGGAAGAGGAACT 158558 ||||| || || ||| || ||||| ||| ||||||| || ||||| Sbjct 3596 TATCCGACGAGCGATCTCGTCATTGAAACTCACAAGGAGGAAGAACT 3550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547022023788240