Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq95847 123 3e-23 >seq95847 Length=10009 Score = 123 bits (136), Expect = 3e-23 Identities = 184/260 (71%), Gaps = 6/260 (2%) Strand=Plus/Plus Query 46986 GCGGGAAGAACATGCGAACTTTCTAGGTCAAAATTATCATTTGGACCATATAGGTTTGTA 47045 || ||||||||||| ||| |||| ||| || || || |||||||| |||| || ||| Sbjct 5687 GCCGGAAGAACATGGGAATTTTCAGGGTGGAAGTTGTCGTTTGGACCGTATAAATTGGTA 5746 Query 47046 GGCATCAAAGAGATAGCATTAAATCCATACTGCTGATGGTATGCCTGACACATCTTGATA 47105 ||||| |||||| |||| | |||||| || ||||| ||||||||||| Sbjct 5747 GGCATACCAGAGATGGCATCCCACTTATACTGTAACCTATACGCCTGGCACATCTTGATC 5806 Query 47106 CCAGCAATCTTTGCAATAGCATAAGAATCATTACTAGGTTCAAGAGGACCACTCATTAGA 47165 ||||| ||||| |||| || || | ||||| | || || |||||||| | | || Sbjct 5807 CCAGCTATCTTAGCAACTGCGTACCATTCATTCGTGGGCTCGAGAGGACCCGTAAGGAGG 5866 Query 47166 TATTCTTCCCTAATAGGTT---GTTCACATAATTTTGGATAAATGCAGGAAGAACCAAGA 47222 |||||||| | || || | || || || || ||||| ||||| ||||| ||||| Sbjct 5867 GATTCTTCCGTGATCGGCTGCGGTGCA---AACTTCGGATATATGCACGAAGATCCAAGG 5923 Query 47223 AATAAAAGTTTCTTAACACC 47242 || | || ||| ||||||| Sbjct 5924 AAAAGCAGCTTCGTAACACC 5943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 664613335326480