Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq52188 107 2e-18 >seq52188 Length=8849 Score = 107 bits (118), Expect = 2e-18 Identities = 215/319 (67%), Gaps = 10/319 (3%) Strand=Plus/Minus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 ||||||||||| ||| || ||| |||| ||| ||||| || || ||||| | Sbjct 3811 GGTGCCAAGATTCCCAAGGGTTGCCTGCTCGTTGGTCCTCCAGGAACTGGGAAGACGTTG 3752 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAAC 175395 || || ||||| | || |||||| | ||||| ||| || ||| | || | | Sbjct 3751 CTGGCTCGAGCAGTAGCCGGTGAAGCCGGCGTCCCGTTCTTCTCGTGTGCGGCGTCCGAG 3692 Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 || || ||| |||| || ||||| ||||| |||| || || || || || | ||| Sbjct 3691 TTCGTCGAGCTGTTCGTCGGTGTCGGTGCTTCTCGGGTCCGGGACCTGTTCGAGAAGGCC 3632 Query 175456 CGCGAAAATCAA-----CCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGC 175510 ||||||| || || ||||| ||||| |||||||| ||||| ||||| | || Sbjct 3631 -----AAATCAAAGGCTCCCTGCATTGTTTTCATAGATGAGATCGATGCTGTGGGGAGGC 3577 Query 175511 AACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTAC 175570 | | |||||||| | | ||||||||| | || || || || || || || | Sbjct 3576 AGAGAGGCGCTGGTCTTGGCGGTGGAAATGACGAACGCGAGCAGACGATCAACCAGCTGC 3517 Query 175571 TCACCGAGATGGATGGCTT 175589 |||| ||||||||||| || Sbjct 3516 TCACGGAGATGGATGGATT 3498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595779786592320