Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq44759 120 5e-22 seq102373 105 1e-17 seq87603 95.1 2e-14 seq50088 95.1 2e-14 seq85017 86.0 1e-11 seq59239 86.0 1e-11 seq50989 86.0 1e-11 >seq44759 Length=4973 Score = 120 bits (132), Expect = 5e-22 Identities = 168/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| |||| ||||| ||||||||||| || | || || ||| || Sbjct 4907 ATTTGCATACCACCCCTCAGACGAAGGACCAGATGCAACGTTGATTCCTTCTGAATGTTG 4848 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||||| || |||| ||| || | || || ||||| || || | | ||| ||| Sbjct 4847 TAGTCGGCTAGGGTTCGGCCATCCTCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGA 4788 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 ||||| || || ||||| || || || || |||| || | || ||| || |||||| Sbjct 4787 TCAGGTGGGATACCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAA 4728 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||||||| | || || || || || ||||| ||||| || || |||||||| Sbjct 4727 CTCTCAACTTCCAACGTGATGGTCTTCCCAGTTAGGGTTTTGACGAAGATTTGCAT 4672 >seq102373 Length=7923 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| || | || || |||||||| | || | ||| || || || |||||| Sbjct 7696 ATGCCACCCCTGAGACGGAGCACCAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCG 7755 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || |||| ||| || | || || || || || || |||||||| ||||| ||| Sbjct 7756 GCTAGGGTTCGTCCATCCTCCAGCTGCTTGCCCGCGAAGATCAATCTCTGCTGATCCGGA 7815 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || || ||||| || || | || | || ||| ||||| ||||||||| Sbjct 7816 GGAATGCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTGTCAATGGTATCCGAAGACTCA 7875 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || ||||| || || || ||||| || || || || || || |||||| Sbjct 7876 ACCTCTAGGGTAATGGTCTTACCCGTGAGAGTCTTCACGAAGATTTGC 7923 >seq87603 Length=1014 Score = 95.1 bits (104), Expect = 2e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || |||||||| | || | ||| || ||| || ||||| | || || | | | Sbjct 508 CGGAGCACCAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGCCAAGGTACGACCA 567 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | || || || ||||| || || | ||| || |||||||| || || || || Sbjct 568 TCCTCGAGCTGCTTACCAGCAAAGATCAAACGCTGCTGGTCAGGAGGAATGCCCTCCTTG 627 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || || | || | ||| ||| ||||| ||||||||||| ||||| || || Sbjct 628 TCCTGGATCTTAGCCTTGACATTGTCAATGGTATCAGAAGACTCAACCTCTAGGGTGATT 687 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || ||||| || || || || ||||| Sbjct 688 GTCTTGCCCGTGAGCGTCTTGACGAAAATCTGCAT 722 >seq50088 Length=882 Score = 95.1 bits (104), Expect = 2e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || |||||||| | || | ||| || ||| || ||||| | || || | | | Sbjct 376 CGGAGCACCAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGCCAAGGTACGACCA 435 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | || || || ||||| || || | ||| || |||||||| || || || || Sbjct 436 TCCTCGAGCTGCTTACCAGCAAAGATCAAACGCTGCTGGTCAGGAGGAATGCCCTCCTTG 495 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || || | || | ||| ||| ||||| ||||||||||| ||||| || || Sbjct 496 TCCTGGATCTTAGCCTTGACATTGTCAATGGTATCAGAAGACTCAACCTCTAGGGTGATT 555 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || ||||| || || || || ||||| Sbjct 556 GTCTTGCCCGTGAGCGTCTTGACGAAAATCTGCAT 590 >seq85017 Length=850 Score = 86.0 bits (94), Expect = 1e-11 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || ||||||| ||| | |||| ||| || || || ||||||| | ||| ||| | Sbjct 455 CGCAGTACCAAATGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTCCTACCA 514 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | || || || || || || || | ||| || || || || || || || || Sbjct 515 TCCTCAAGCTGCTTACCAGCGAAGATCAACCGCTGCTGGTCTGGCGGGATACCCTCCTTG 574 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || || | || | || || |||||||||||||| || ||||| || || Sbjct 575 TCCTGAATCTTAGCCTTGACGTTGTCGATGGTATCGGAAGACTCGACCTCTAGGGTAATG 634 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| ||||| || || || || || ||||| Sbjct 635 GTCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 669 >seq59239 Length=983 Score = 86.0 bits (94), Expect = 1e-11 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || ||||||| ||| | |||| ||| || || || ||||||| | ||| ||| | Sbjct 588 CGCAGTACCAAATGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTCCTACCA 647 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | || || || || || || || | ||| || || || || || || || || Sbjct 648 TCCTCAAGCTGCTTACCAGCGAAGATCAACCGCTGCTGGTCTGGCGGGATACCCTCCTTG 707 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || || | || | || || |||||||||||||| || ||||| || || Sbjct 708 TCCTGAATCTTAGCCTTGACGTTGTCGATGGTATCGGAAGACTCGACCTCTAGGGTAATG 767 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| ||||| || || || || || ||||| Sbjct 768 GTCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 802 >seq50989 Length=854 Score = 86.0 bits (94), Expect = 1e-11 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || ||||||| ||| | |||| ||| || || || ||||||| | ||| ||| | Sbjct 259 CGCAGTACCAAATGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTCCTACCA 318 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | || || || || || || || | ||| || || || || || || || || Sbjct 319 TCCTCAAGCTGCTTACCAGCGAAGATCAACCGCTGCTGGTCTGGCGGGATACCCTCCTTG 378 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || || | || | || || |||||||||||||| || ||||| || || Sbjct 379 TCCTGAATCTTAGCCTTGACGTTGTCGATGGTATCGGAAGACTCGACCTCTAGGGTAATG 438 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| ||||| || || || || || ||||| Sbjct 439 GTCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 898463325048480