Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq60603 105 2e-17 seq61852 98.7 3e-15 >seq60603 Length=6970 Score = 105 bits (116), Expect = 2e-17 Identities = 208/304 (68%), Gaps = 8/304 (3%) Strand=Plus/Plus Query 302544 TACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAAT 302603 |||||| ||| || || ||| | ||| ||||| ||| | | || | ||| || Sbjct 3423 TACGGTACCATCGTACTTAACCATCACGTCCTCCATGGCCTTCACCAGCCGCCTCTGGAT 3482 Query 302604 ATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGC 302663 || || || || || || || || ||||| || ||||| | || || ||||| || Sbjct 3483 GTACCCGGTCTCCGACGTCTTCACCGCGGTATCGATGAGACCCTCGCGTCCTCCCATGGC 3542 Query 302664 ATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACG 302723 ||||| || | ||||| ||| || ||| | | | ||| |||| ||||| || || Sbjct 3543 GTGGAAAAAGAACTCTTGCGGGGTTAACCCTCGGAGGTACGAGTTCTCGACGAAGCCTCG 3602 Query 302724 CGCCTCGGGCG---AATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCT-CATAGC 302779 ||||||| ||||||| ||| || ||||| |||| |||| | ||| | ||| Sbjct 3603 ACTCTCGGGCCCGTAATCGTC---CTTCGTGAAGTGCGGCAATGTCC-GATCTACGAAGC 3658 Query 302780 CGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAA 302839 || |||| || ||||| || || ||||||||||| || | || | |||||||||||| | Sbjct 3659 CGAATGGTATCCGCTTGCCCTCGACGTTCTGCTGCCCGACACAAGCAATCATCTGCGAGA 3718 Query 302840 TATT 302843 | || Sbjct 3719 TGTT 3722 >seq61852 Length=11963 Score = 98.7 bits (108), Expect = 3e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 302617 GATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGC 302676 || ||||| || || || || || || || | || || ||||| || |||||| | | | Sbjct 1508 GAGGTTTTCACCGCGGTGTCGATCAGCCCTTCTCGCCCTCCCATGGCGTGGAAGTAAAAC 1449 Query 302677 TCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAA 302736 || | ||| ||||||| | | ||| |||| |||||||| || ||| ||| Sbjct 1448 TCCTGCGGGGTGAGCCCCCGGAGGTACGAGTTCTCCACGAAACCCCGGCTCTCCGGCCCG 1389 Query 302737 TCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTT 302796 | |||| |||||| ||||| || || || |||| | ||| | || || ||||| Sbjct 1388 TAGTCGTCCTTGGTGAAGTGCGGGAGAGTTCTGTCGATGAACCCGAAGGGTATCCGCTTC 1329 Query 302797 CCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 || |||||||||||||| |||| |||| |||||||| || || || Sbjct 1328 CCCTCAACGTTCTGCTGCCCCACACACGCGATCATCTGGGAGATGTT 1282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1469820309481018