Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq44759 89.7 4e-13 seq77449 86.0 5e-12 seq77395 84.2 2e-11 seq50989 84.2 2e-11 >seq44759 Length=4973 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || |||||||| |||| || || ||||| || | ||| ||| | | Sbjct 4672 ATGCAAATCTTCGTCAAAACCCTAACTGGGAAGACCATCACGTTGGAAGTTGAGAGTTCC 4731 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | || || ||||| ||||| ||||| | || ||||| Sbjct 4732 GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGTATCCCACCTGATCAG 4791 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | || ||||| ||||||||||||| | |||| | || || |||||| Sbjct 4792 CAGCGTCTCATCTTCGCCGGTAAGCAGCTGGAGGATGGCCGAACCCTAGCCGACTACAAC 4851 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||||| || ||||| |||||||| |||| Sbjct 4852 ATTCAGAAGGAATCAACGTTGCATCTGGT 4880 >seq77449 Length=4901 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 34398 GTCGTGGGAGCCGTTGACGAT-GAATCGTTCGTTTTTGTAATCGACCTGCGTTTGCGCGC 34456 ||||||||||||||||||||| ||| | ||| || | |||| || | || || | Sbjct 3662 GTCGTGGGAGCCGTTGACGATCGAAGTGCCCGTCTTC-TCGTCGAACTTGGACTGGGCAC 3604 Query 34457 CCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACGTCCAAGCGCCTTGGCGA 34516 | |||||||| |||||| |||| |||| ||| | || ||| | || |||||||| | Sbjct 3603 CGAGCTCGCAGCCGAAGAACTTGGTCGTGTACGACGGAGGGCGTGCCAGTGCCTTGGCCA 3544 Query 34517 TTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTTCCTTCGACCTTGGCGC 34576 || |||||| || | | |||||||||||||| || || |||| ||||| Sbjct 3543 CGTCCACCATGTTCACCAGGTTGGTCTTGATGCCGTTACCACGACCCTCGATCTTGGTTA 3484 Query 34577 AGATGCGCGGCATTTTGTAGCGGTAGAACGCGTC 34610 | | ||||| ||||| | |||||| || || Sbjct 3483 CCAGCCTGGGCATCTTGTACCTGTAGAAGGCATC 3450 >seq77395 Length=9811 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 110297 ACCGGCAAAACCATTACCGTCGAAACGGAGCCTGACGATACTGTCGGCCAGGTAAAACAG 110356 ||||| || ||||| ||| |||| ||| | ||||| ||| | | || || Sbjct 1454 ACCGGGAAGACCATCACCCTCGAGGTTGAGTCCTCGGATACCATCGACAATGTGAAGGCC 1395 Query 110357 AAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAA 110416 |||||| |||||||| || | || ||||| || || || || | |||||| || Sbjct 1394 AAGATTCAGGACAAAGAGGGGATCCCACCTGATCAGCAGAGGCTCATCTTTGCGGGCAAG 1335 Query 110417 CAGCTGGAGGATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCAC 110476 ||||||||||||| |||| |||| || |||||||| ||||| ||||| || ||||| Sbjct 1334 CAGCTGGAGGATGGGCGAACCCTGGCTGACTACAACATCCAAAAGGAATCGACTCTGCAC 1275 Query 110477 ATGGTG 110482 | ||| Sbjct 1274 CTCGTG 1269 >seq50989 Length=854 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 ||||| || || | ||| |||||| ||| | || || | || ||||| ||| ||||| Sbjct 836 GACAAGGAGGGTATCCCCCCGGATCAGCAACGTCTCATCTTCGCTGGTAAGCAGTTGGAG 777 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTA 110485 |||| || || |||| || ||||||||||| || || || ||||||||| ||||| | Sbjct 776 GATGGTAGGACGTTGGCCGACTACAACATTCAGAAGGAGTCGACGTTGCACCTGGTGCTT 717 Query 110486 AGACTGCGAggggg 110499 | ||||| || || Sbjct 716 CGTCTGCGTGGTGG 703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412308692967602