Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq50141 118 2e-20 seq103190 109 9e-18 seq103189 109 9e-18 seq76306 104 4e-16 seq55080 95.1 2e-13 seq60603 93.3 7e-13 seq100708 86.0 1e-10 >seq50141 Length=1052 Score = 118 bits (130), Expect = 2e-20 Identities = 173/243 (71%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || |||||||||||||||| || ||||| |||||||| ||| |||| ||||| || | | Sbjct 873 TGAACTTGGTGACGGCCTTAGTTCCCTCGGAGACGGCATGCTTGGCGAGTTCACCAGGGA 814 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||| || || || ||||||||||| |||| ||| ||| |||||| || Sbjct 813 GGATGAGCTTGACCGCCGTCTGGATCTCCCGGGACGTGATGGTGGGCTTCTTGTTGTAGC 754 Query 1485590 GCGCCAG--GCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 ||||||| || | || || | | | | |||| |||||||||| || ||| Sbjct 753 GCGCCAGCCTCGACGATTCTTGGGCCAGCTTC--TCGAAGATGTCGTTGATGAAGCTGTT 696 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| ||| | ||| |||||| || |||||| |||||||||||||| ||||| Sbjct 695 CATGATGCCCATGGCCTTGGAGGAGATACCAGTGTCGGGATGCACCTGCTTGAGTACCTT 636 Query 1485708 GTA 1485710 ||| Sbjct 635 GTA 633 >seq103190 Length=4026 Score = 109 bits (120), Expect = 9e-18 Identities = 172/243 (71%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||||||||||||||||||||| |||||||||||| |||| || || ||| | | Sbjct 1556 TGAACTTGGTGACGGCCTTGGTACCCTCGGAGACGGCGTGCTTGGCGAGCTCACCGGGAA 1615 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || ||||| || || |||||||||| | ||| || |||||| || Sbjct 1616 GAATGAGCTTGACGGCCGTTTGAATCTCGCGGGAGGTGATGGTCGGCTTCTTGTTGTAGC 1675 Query 1485590 GCGCCAGGCGGCCGGCCTC-GGTGCC-GATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | || || | ||||| | ||| | | | |||| |||||||||| || ||| Sbjct 1676 GGGCGAGCCTAGACGCCTCTTGCGCCAGCTTC--TCGAAGATGTCGTTGATGAAGCTGTT 1733 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| ||| | ||| || || ||| |||||| || |||||||| || ||||| Sbjct 1734 CATGATGCCCATGGCCTTGGACGAAATCCCCGTGTCGGGATGAACCTGCTTCAGTACCTT 1793 Query 1485708 GTA 1485710 ||| Sbjct 1794 GTA 1796 >seq103189 Length=2226 Score = 109 bits (120), Expect = 9e-18 Identities = 172/243 (71%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||||||||||||||||||||| |||||||||||| |||| || || ||| | | Sbjct 1556 TGAACTTGGTGACGGCCTTGGTACCCTCGGAGACGGCGTGCTTGGCGAGCTCACCGGGAA 1615 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || ||||| || || |||||||||| | ||| || |||||| || Sbjct 1616 GAATGAGCTTGACGGCCGTTTGAATCTCGCGGGAGGTGATGGTCGGCTTCTTGTTGTAGC 1675 Query 1485590 GCGCCAGGCGGCCGGCCTC-GGTGCC-GATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | || || | ||||| | ||| | | | |||| |||||||||| || ||| Sbjct 1676 GGGCGAGCCTAGACGCCTCTTGCGCCAGCTTC--TCGAAGATGTCGTTGATGAAGCTGTT 1733 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| ||| | ||| || || ||| |||||| || |||||||| || ||||| Sbjct 1734 CATGATGCCCATGGCCTTGGACGAAATCCCCGTGTCGGGATGAACCTGCTTCAGTACCTT 1793 Query 1485708 GTA 1485710 ||| Sbjct 1794 GTA 1796 >seq76306 Length=4672 Score = 104 bits (114), Expect = 4e-16 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || ||||| ||| ||| | ||||| |||| || || ||||||||||| |||||| Sbjct 913 CCCTCGTCCCGAGAGATGAGCTCGTTCGAGAAGCTTAGACCAGGCATGAGGCCTCGCTTC 972 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 |||||||| || |||||||| || || || ||||| || |||||||| ||| |||||| Sbjct 973 TTGAGCCAGAAAATGGCACAAAAGCTTCCAGAGAAGAATATGCCCTCAACGCACGCAAAG 1032 Query 794461 CCGACGAGCCGCTCGGCAAA 794480 | | ||||| |||||||| Sbjct 1033 GCTAGGAGCCTTTCGGCAAA 1052 >seq55080 Length=3096 Score = 95.1 bits (104), Expect = 2e-13 Identities = 168/244 (69%), Gaps = 6/244 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| || |||||||| || || || ||||| | || || ||||| | | Sbjct 818 TGTACTTGGTGACAGCTTTGGTACCTTCGGAAACTGCGTGTTTTGCGAGCTCGCCTGGGA 759 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTG- 1485588 ||| ||||| || |||| ||| || || | | | ||| | ||| ||| | | || Sbjct 758 AGATGAGGCGAACTGCGGCCTGAATTTCTCTGCTCTGGATTG---TGCTCTTCTGATTGT 702 Query 1485589 --CGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGT 1485646 | | ||||| || ||||||||||| | ||||| || || || | || || || Sbjct 701 ATCTAGATAGGCGCCCTGCCTCGGTGCCCACCCGGTCCATAATATCATGGATGAAGCTGT 642 Query 1485647 TCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCT 1485706 |||| || ||| | |||| || | || ||| ||||| || || |||||||||| Sbjct 641 TCATTATGTTCATGGCTTTGATGCTCACGCTTGTGTCTGGGTGAACTTGTTTGAGCACCT 582 Query 1485707 TGTA 1485710 |||| Sbjct 581 TGTA 578 >seq60603 Length=6970 Score = 93.3 bits (102), Expect = 7e-13 Identities = 194/285 (68%), Gaps = 8/285 (3%) Strand=Plus/Minus Query 434127 GTGATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACACC 434186 ||||||||||| |||||| | ||||| ||| |||| ||| |||| | | ||| ||| Sbjct 1922 GTGATCTCCTTCGACGGCTCGTACGTGAACTACCGTCACCTTGCCATTCTCTGCGATACC 1863 Query 434187 ATGTGCTGTCGCGGCTCGGTGGTGGCCGTCACGCGGCACGGCTTCAACCGGGCCGACCAC 434246 ||| | || || | |||| | || |||||||| ||||||| |||| | Sbjct 1862 ATGACGTACCGTGGTCACCTCATGGCGATTACCCGGCACGGTATCAACCGCAACGACACC 1803 Query 434247 GGCTTTCTGTCGCGGGCCTCCTTTGAGGAGACTGTCGACATCCTCTTTGACGCGGCGGCC 434306 ||| || ||| ||| || |||||||| |||||||| || || ||||| || | Sbjct 1802 GGCCCGATGATGCGCTGCTCGTTCGAGGAGACGGTCGACATTCTTTTGGACGCCGCCATC 1743 Query 434307 TTTGCCGAGACCGACAAGATCACCGACGGATCGGTCACCGAGCCCATCATTCTAGGCCAG 434366 | |||||| ||||| |||| ||| || |||||| |||||| || || ||| Sbjct 1742 TACGCCGAGGCCGAC-----CACCTCCGG-GGAGTGACCGAGAACATCATGCTCGGACAG 1689 Query 434367 GCGGCGCCCATCGGCA-CGGCCATCTCGGACGTGCTCGTGACCGA 434410 ||||| ||||| | |||| | |||||| ||||| | | ||| Sbjct 1688 CTTGCGCCTATCGGAACCGGCGACTTCGGAC-TGCTCCTCAACGA 1645 Score = 86.0 bits (94), Expect = 1e-10 Identities = 150/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 429018 CAGTCGACCCAGCGGTCGGGCAAGCCCACCAAGGGCGTCGTGG-AGCGATTCAAGGGCAA 429076 ||| | || || || ||||| | ||||| |||| || || | ||| |||||| ||| Sbjct 5420 CAGGCAACGCAACGTTCGGGTAGGCCCATCAAGT-CGATATGCCAACGACTCAAGGCCAA 5362 Query 429077 GGAGGGCCGGATCCGCGGCAATTGCATGGGCAAGCGCGTCAACTTTACGGCGCGCGCCGT 429136 |||||| || ||||| || || |||||| ||||| || |||| |||| || |||| Sbjct 5361 GGAGGGTCGTATCCGTGGTAACCTCATGGGAAAGCGAGTGGACTTCTCGGCTCGTACCGT 5302 Query 429137 CATCAGTCCCGACCCCGAAATCGACATTGACGAGGTGGGCGTGCCCTATGAG-ATCGTCA 429195 ||| | || ||||| | || |||| || ||| | || || || | ||| |||| Sbjct 5301 CATTACCCCGGACCCGAACATTAACATCGATGAGCTCGGTGTACCATG-GAGTATCGCGT 5243 Query 429196 AGACGCTCACCTTTCCCGAGCGCGTGACGCCCT 429228 || || || ||||||||| ||||||||||| Sbjct 5242 TGAACCTGACGTTTCCCGAGACCGTGACGCCCT 5210 >seq100708 Length=2870 Score = 86.0 bits (94), Expect = 1e-10 Identities = 167/243 (69%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||||||||||||||| || || |||||||| ||| |||| || || ||| | | Sbjct 682 TGAACTTGGTGACGGCCTTGGTTCCTTCAGAGACGGCATGCTTGGCGAGCTCACCGGGAA 741 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || ||||| || ||||||||||||| | ||| || |||||| || Sbjct 742 GAATGAGCTTGACGGCCGTTTGGATCTCGCGGGAGGTGATAGTCGGCTTCTTGTTGTAGC 801 Query 1485590 GCGCCAGGC-GGCCGGC-CTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | || || | || || | || || | | | | |||| |||||||||| || ||| Sbjct 802 GGGCAAGCCTGGACGCCTCTTGGGCCAGCTTC--TCGAAGATGTCGTTGATGAAGCTGTT 859 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| ||| | ||| || || || ||| || || || ||||| | ||||| Sbjct 860 CATGATGCCCATGGCCTTGGATGAAATACCTGTGTCCGGATGAACTTGCTTCAATACCTT 919 Query 1485708 GTA 1485710 ||| Sbjct 920 GTA 922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7904979844746246