Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq44759 89.7 4e-13 seq102373 82.4 6e-11 >seq44759 Length=4973 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| || |||||||| |||| || || ||||| || | ||| ||| | | Sbjct 4672 ATGCAAATCTTCGTCAAAACCCTAACTGGGAAGACCATCACGTTGGAAGTTGAGAGTTCC 4731 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || || ||||| || || ||||| | || |||||| Sbjct 4732 GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGTATCCCACCTGATCAG 4791 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || ||||| ||||||||||| | | ||| | || ||||||||| Sbjct 4792 CAGCGTCTCATCTTCGCCGGTAAGCAGCTGGAGGATGGCCGAACCCTAGCCGACTACAAC 4851 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||| ||||| || |||||||| |||| Sbjct 4852 ATTCAGAAGGAATCAACGTTGCATCTGGT 4880 >seq102373 Length=7923 Score = 82.4 bits (90), Expect = 6e-11 Identities = 143/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 107558 GCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGCGA 107617 |||||| || || || ||| | || || || ||||||||| | || ||| || || Sbjct 7923 GCAAATCTTCGTGAAGACTCTCACGGGTAAGACCATTACCCTAGAGGTTGAGTCTTCGGA 7864 Query 107618 TACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAGCA 107677 ||| | | | | || || ||||| || || || ||| | || ||||||||| Sbjct 7863 TACCATTGACAACGTCAAGGCTAAGATCCAAGACAAGGAGGGCATTCCTCCGGATCAGCA 7804 Query 107678 GAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAACAT 107737 |||| | || | ||||| || ||||||||||| | ||| | || ||||||||||| Sbjct 7803 GAGATTGATCTTCGCGGGCAAGCAGCTGGAGGATGGACGAACCCTAGCCGACTACAACAT 7744 Query 107738 TCAAAAGGAGTCTACGTTGCACATGGTG 107765 || |||||||| ||| | || ||||| Sbjct 7743 CCAGAAGGAGTCGACGCTCCATCTGGTG 7716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398361919106746