Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq102373 118 8e-22 seq85017 116 3e-21 seq59239 116 3e-21 seq50989 116 3e-21 >seq102373 Length=7923 Score = 118 bits (130), Expect = 8e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||||| |||||| ||||| || || |||||||| || ||||| | ||| ||| | Sbjct 7483 CGAAGCACCAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGCTAAGGTACGACCA 7542 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || | || || || ||| | ||||| | ||||||||||| ||||| ||||| ||| Sbjct 7543 TCCTCCAACTGCTTCCCGGCAAAGATCAAACGCTGCTGATCCGGAGGAATGCCCTCCTTG 7602 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || ||||| | || | || || ||| || || || || || || Sbjct 7603 TCCTGGATCTTGGCCTTGACGTTGTCGATGGTATCCGAACTCTCGACCTCTAGGGTGATG 7662 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || |||| |||||| || || |||||||| Sbjct 7663 GTCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 7697 Score = 104 bits (114), Expect = 2e-17 Identities = 158/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | ||| ||||||| ||| ||||| || || || || ||||| || || || Sbjct 7699 CCACCCCTGAGACGGAGCACCAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCT 7758 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || ||| || || || ||||| || | |||||||| ||||||||||| ||| Sbjct 7759 AGGGTTCGTCCATCCTCCAGCTGCTTGCCCGCGAAGATCAATCTCTGCTGATCCGGAGGA 7818 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| |||||||| | || ||||| | || | || || ||| || || Sbjct 7819 ATGCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTGTCAATGGTATCCGAAGACTCAACC 7878 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGC 29784 || || || || || || || || | || || || || || ||| Sbjct 7879 TCTAGGGTAATGGTCTTACCCGTGAGAGTCTTCACGAAGATTTGC 7923 >seq85017 Length=850 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||| | |||||| |||||||||||||| || || || || ||||| || || || Sbjct 443 CCTCCCCTGAGACGCAGTACCAAATGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGGCC 502 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | | ||| || || || || ||||| | ||||| | ||||| || ||||| Sbjct 503 AGCGTCCTACCATCCTCAAGCTGCTTACCAGCGAAGATCAACCGCTGCTGGTCTGGCGGG 562 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 |||||||| ||||| || ||| || | ||||| | || | || || ||| || || Sbjct 563 ATACCCTCCTTGTCCTG-AATCTTAGCCTTGACGTTGTCGATGGTATCGGAAGACTCGAC 621 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || || || |||| ||| || || || |||||||| Sbjct 622 CTCTAGGGTAATGGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 669 >seq59239 Length=983 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||| | |||||| |||||||||||||| || || || || ||||| || || || Sbjct 576 CCTCCCCTGAGACGCAGTACCAAATGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGGCC 635 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | | ||| || || || || ||||| | ||||| | ||||| || ||||| Sbjct 636 AGCGTCCTACCATCCTCAAGCTGCTTACCAGCGAAGATCAACCGCTGCTGGTCTGGCGGG 695 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 |||||||| ||||| || ||| || | ||||| | || | || || ||| || || Sbjct 696 ATACCCTCCTTGTCCTG-AATCTTAGCCTTGACGTTGTCGATGGTATCGGAAGACTCGAC 754 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || || || |||| ||| || || || |||||||| Sbjct 755 CTCTAGGGTAATGGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 802 >seq50989 Length=854 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||| | |||||| |||||||||||||| || || || || ||||| || || || Sbjct 247 CCTCCCCTGAGACGCAGTACCAAATGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGGCC 306 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | | ||| || || || || ||||| | ||||| | ||||| || ||||| Sbjct 307 AGCGTCCTACCATCCTCAAGCTGCTTACCAGCGAAGATCAACCGCTGCTGGTCTGGCGGG 366 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 |||||||| ||||| || ||| || | ||||| | || | || || ||| || || Sbjct 367 ATACCCTCCTTGTCCTG-AATCTTAGCCTTGACGTTGTCGATGGTATCGGAAGACTCGAC 425 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || || || |||| ||| || || || |||||||| Sbjct 426 CTCTAGGGTAATGGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384721948703874