Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq87603 107 4e-18 seq85017 107 4e-18 seq59239 107 4e-18 seq50989 107 4e-18 seq50088 107 4e-18 seq44759 98.7 2e-15 >seq87603 Length=1014 Score = 107 bits (118), Expect = 4e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || || | ||||| || || || || || || || ||||| || || || || | | Sbjct 724 CCACCCCTAAGACGCAACACCAAATGGAGCGTCGACTCCTTCTGAATGTTGTAGTCGGCT 783 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || ||| || || || || || || || |||||||| | || || || || || || Sbjct 784 AGGGTTCGCCCATCCTCGAGCTGCTTCCCGGCAAAGATCAATCGCTGCTGGTCGGGCGGA 843 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || || ||||| || || || || || ||||| ||| || || || Sbjct 844 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCAGAAGACTCAACC 903 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || ||||||||||| || | || || || || |||||||| Sbjct 904 TCCAAGGTGATCGTCTTGCCAGTTAGGGTTTTCACGAAGATCTGCAT 950 Score = 105 bits (116), Expect = 1e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| || || ||||| || || || || | | | | ||| || || || || Sbjct 520 TGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGCCAAGGTACGACCATCCTCGAGCTGC 579 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| | | || || || ||||| || || ||||| || || ||||| Sbjct 580 TTACCAGCAAAGATCAAACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTA 639 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || ||||| ||||| |||||| || || || || | || || |||||||| || Sbjct 640 GCCTTGACATTGTCAATGGTATCAGAAGACTCAACCTCTAGGGTGATTGTCTTGCCCGTG 699 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | |||||| || || |||||||| Sbjct 700 AGCGTCTTGACGAAAATCTGCAT 722 >seq85017 Length=850 Score = 107 bits (118), Expect = 4e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| ||||| | || |||||||| || ||||| || || || || | Sbjct 215 CCACCACGCAGACGGAGAACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCA 274 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || || || || || || || || ||||| || | || || || ||||| Sbjct 275 AGGGTGCGGCCATCCTCCAGCTGCTTCCCTGCGAAGATGAGACGCTGCTGGTCAGGAGGA 334 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| || || ||||| || || || || ||||| ||||| | || || Sbjct 335 ATTCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCAATAGTATCGGAACTCTCAACC 394 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || ||||| || || | ||||| || || |||||||| Sbjct 395 TCCAAGGTGATGGTCTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 441 >seq59239 Length=983 Score = 107 bits (118), Expect = 4e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| ||||| | || |||||||| || ||||| || || || || | Sbjct 348 CCACCACGCAGACGGAGAACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCA 407 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || || || || || || || || ||||| || | || || || ||||| Sbjct 408 AGGGTGCGGCCATCCTCCAGCTGCTTCCCTGCGAAGATGAGACGCTGCTGGTCAGGAGGA 467 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| || || ||||| || || || || ||||| ||||| | || || Sbjct 468 ATTCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCAATAGTATCGGAACTCTCAACC 527 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || ||||| || || | ||||| || || |||||||| Sbjct 528 TCCAAGGTGATGGTCTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 574 >seq50989 Length=854 Score = 107 bits (118), Expect = 4e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| ||||| | || |||||||| || ||||| || || || || | Sbjct 19 CCACCACGCAGACGGAGAACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCA 78 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || || || || || || || || ||||| || | || || || ||||| Sbjct 79 AGGGTGCGGCCATCCTCCAGCTGCTTCCCTGCGAAGATGAGACGCTGCTGGTCAGGAGGA 138 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| || || ||||| || || || || ||||| ||||| | || || Sbjct 139 ATTCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCAATAGTATCGGAACTCTCAACC 198 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || ||||| || || | ||||| || || |||||||| Sbjct 199 TCCAAGGTGATGGTCTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 245 >seq50088 Length=882 Score = 107 bits (118), Expect = 4e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || || | ||||| || || || || || || || ||||| || || || || | | Sbjct 592 CCACCCCTAAGACGCAACACCAAATGGAGCGTCGACTCCTTCTGAATGTTGTAGTCGGCT 651 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || ||| || || || || || || || |||||||| | || || || || || || Sbjct 652 AGGGTTCGCCCATCCTCGAGCTGCTTCCCGGCAAAGATCAATCGCTGCTGGTCGGGCGGA 711 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || || ||||| || || || || || ||||| ||| || || || Sbjct 712 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCAGAAGACTCAACC 771 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || ||||||||||| || | || || || || |||||||| Sbjct 772 TCCAAGGTGATCGTCTTGCCAGTTAGGGTTTTCACGAAGATCTGCAT 818 Score = 105 bits (116), Expect = 1e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| || || ||||| || || || || | | | | ||| || || || || Sbjct 388 TGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGCCAAGGTACGACCATCCTCGAGCTGC 447 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| | | || || || ||||| || || ||||| || || ||||| Sbjct 448 TTACCAGCAAAGATCAAACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTA 507 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || ||||| ||||| |||||| || || || || | || || |||||||| || Sbjct 508 GCCTTGACATTGTCAATGGTATCAGAAGACTCAACCTCTAGGGTGATTGTCTTGCCCGTG 567 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | |||||| || || |||||||| Sbjct 568 AGCGTCTTGACGAAAATCTGCAT 590 >seq44759 Length=4973 Score = 98.7 bits (108), Expect = 2e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| || || | ||| || ||||| || ||||| || || || || | | Sbjct 4670 CCACCACGCAGACGAAGCACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCT 4611 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || ||| || || || || || || ||||||||||| | | || || || || ||| Sbjct 4610 AGGGTTCGGCCATCCTCGAGCTGCTTACCAGCAAAGATCAACCGCTGCTGGTCGGGGGGT 4551 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTAC 82762 || || ||||| || || ||||| || || || || || ||||| || || | || || Sbjct 4550 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTATCGATCGTGTC-GGAGCTCTCGAC 4492 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || |||||||| || | ||||| || || |||||||| Sbjct 4491 CTCGAGGGTGATGGTCTTGCCAGTTAGGGTCTTGACGAAGATCTGCAT 4444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980494837784846