Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq87603 96.9 2e-15 seq50088 96.9 2e-15 >seq87603 Length=1014 Score = 96.9 bits (106), Expect = 2e-15 Identities = 168/241 (70%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||| || | ||| ||||||||||| || || ||| || || ||| Sbjct 712 AAAATCTGCATGCCACCCCTAAGACGCAACACCAAATGGAGCGTCGACTCCTTCTGAATG 771 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 ||||| |||| || || || | || || | || || |||||||| ||||| |||||| Sbjct 772 TTGTAGTCGGCTAGGGTTCGCCCATCCTCGAGCTGCTTCCCGGCAAAGATCAATCGCTGC 831 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 || || |||| | || || ||||| || || | | || | ||| | ||||| Sbjct 832 TGGTCGGGCGGAATGCCCTCCTTGTCCTGGATCTT-GGCCTTGACGTTGTCGATCGTGTC 890 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || || || | |||||||| || || |||| ||||| || ||||||||||| Sbjct 891 AGAAGACTCAACCTCCAAGGTGATCGTCTTGCCAGTTAGGGTTTTCACGAAGATCTGCAT 950 Query 33750 A 33750 | Sbjct 951 A 951 >seq50088 Length=882 Score = 96.9 bits (106), Expect = 2e-15 Identities = 168/241 (70%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||| || | ||| ||||||||||| || || ||| || || ||| Sbjct 580 AAAATCTGCATGCCACCCCTAAGACGCAACACCAAATGGAGCGTCGACTCCTTCTGAATG 639 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 ||||| |||| || || || | || || | || || |||||||| ||||| |||||| Sbjct 640 TTGTAGTCGGCTAGGGTTCGCCCATCCTCGAGCTGCTTCCCGGCAAAGATCAATCGCTGC 699 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 || || |||| | || || ||||| || || | | || | ||| | ||||| Sbjct 700 TGGTCGGGCGGAATGCCCTCCTTGTCCTGGATCTT-GGCCTTGACGTTGTCGATCGTGTC 758 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || || || | |||||||| || || |||| ||||| || ||||||||||| Sbjct 759 AGAAGACTCAACCTCCAAGGTGATCGTCTTGCCAGTTAGGGTTTTCACGAAGATCTGCAT 818 Query 33750 A 33750 | Sbjct 819 A 819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328279700042880