Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq44759 116 9e-21 seq85017 113 1e-19 seq59239 113 1e-19 seq50989 113 1e-19 seq102373 89.7 1e-12 >seq44759 Length=4973 Score = 116 bits (128), Expect = 9e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || |||||||| || ||||| ||||| | || ||||| ||| ||||| |||| Sbjct 4231 AAGACGCTCACCGGCAAAACCATCACCCTTGAGGTGGAGTCTTCGGACACCATCGACAAC 4290 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || ||| |||||| || | || |||||| Sbjct 4291 GTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCACCGGACCAGCAGCGTCTCATCTTC 4350 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||||||||||||||| ||||| ||||||| |||||| |||| || ||||| Sbjct 4351 GCTGGTAAGCAGTTGGAAGATGGTAGGACGCTGGCCGACTACAACATCCAAAAGGAGTCG 4410 Query 206365 ACTCTTCACCTTGT 206378 || | || ||||| Sbjct 4411 ACCTTGCATCTTGT 4424 Score = 87.8 bits (96), Expect = 4e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| || || || || || ||||| |||||||| || ||||| ||||| | || Sbjct 4686 CAAAACCCTAACTGGGAAGACCATCACGTTGGAAGTTGAGAGTTCCGACACCATTGACAA 4745 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||||| || || || ||||| || || || || | || ||||| Sbjct 4746 CGTCAAGGCCAAGATCCAGGACAAGGAAGGTATCCCACCTGATCAGCAGCGTCTCATCTT 4805 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||| |||||| |||| ||||| | || | ||||| |||||| | ||||| || || Sbjct 4806 CGCCGGTAAGCAGCTGGAGGATGGCCGAACCCTAGCCGACTACAACATTCAGAAGGAATC 4865 Query 206364 TAC 206366 || Sbjct 4866 AAC 4868 >seq85017 Length=850 Score = 113 bits (124), Expect = 1e-19 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| ||||| || ||||| ||||| || || ||||| || || | || Sbjct 426 AAGACTCTCACTGGAAAGACCATCACCTTGGAGGTTGAGAGTTCCGATACTATTGACAAC 367 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||||||| || ||| || | || |||||| Sbjct 366 GTTAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGACCAGCAGCGTCTCATCTTC 307 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||| ||||| | || | ||||| |||||| ||||||| |||||| Sbjct 306 GCAGGGAAGCAGCTGGAGGATGGCCGCACCCTTGCCGACTACAACATCCAGAAGGAGTCT 247 Query 206365 ACTCTTCACCTTGTT 206379 ||||| || || ||| Sbjct 246 ACTCTCCATCTGGTT 232 >seq59239 Length=983 Score = 113 bits (124), Expect = 1e-19 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| ||||| || ||||| ||||| || || ||||| || || | || Sbjct 559 AAGACTCTCACTGGAAAGACCATCACCTTGGAGGTTGAGAGTTCCGATACTATTGACAAC 500 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||||||| || ||| || | || |||||| Sbjct 499 GTTAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGACCAGCAGCGTCTCATCTTC 440 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||| ||||| | || | ||||| |||||| ||||||| |||||| Sbjct 439 GCAGGGAAGCAGCTGGAGGATGGCCGCACCCTTGCCGACTACAACATCCAGAAGGAGTCT 380 Query 206365 ACTCTTCACCTTGTT 206379 ||||| || || ||| Sbjct 379 ACTCTCCATCTGGTT 365 >seq50989 Length=854 Score = 113 bits (124), Expect = 1e-19 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| ||||| || ||||| ||||| || || ||||| || || | || Sbjct 230 AAGACTCTCACTGGAAAGACCATCACCTTGGAGGTTGAGAGTTCCGATACTATTGACAAC 171 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||||||| || ||| || | || |||||| Sbjct 170 GTTAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGACCAGCAGCGTCTCATCTTC 111 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||| ||||| | || | ||||| |||||| ||||||| |||||| Sbjct 110 GCAGGGAAGCAGCTGGAGGATGGCCGCACCCTTGCCGACTACAACATCCAGAAGGAGTCT 51 Query 206365 ACTCTTCACCTTGTT 206379 ||||| || || ||| Sbjct 50 ACTCTCCATCTGGTT 36 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || || || || ||||| ||| | || |||||||| || ||| Sbjct 845 AAGATCCAGGACAAGGAGGGTATCCCCCCGGATCAGCAACGTCTCATCTTCGCTGGTAAG 786 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 |||||||| ||||| ||||| |||||||| |||||| | ||||| ||||| || | ||| Sbjct 785 CAGTTGGAGGATGGTAGGACGTTGGCCGACTACAACATTCAGAAGGAGTCGACGTTGCAC 726 Query 206374 CTTGT 206378 || || Sbjct 725 CTGGT 721 >seq102373 Length=7923 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || ||||| | || || || ||||| || || |||| Sbjct 7682 AAAACCCTAACGGGTAAGACCATCACCCTAGAGGTCGAGAGTTCGGATACCATCGACAAC 7623 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || ||| ||||| || | | ||||| Sbjct 7622 GTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCGGATCAGCAGCGTTTGATCTTT 7563 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| ||||||||||| ||||| | || || || || |||||| | ||||| ||||| Sbjct 7562 GCCGGGAAGCAGTTGGAGGATGGTCGTACCTTAGCGGACTACAACATTCAGAAGGAGTCC 7503 Query 206365 ACTCTTCACCTTGT 206378 |||||||| || || Sbjct 7502 ACTCTTCATCTGGT 7489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1180217041844794