Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq87603 86.0 6e-12 seq50088 86.0 6e-12 seq44759 82.4 7e-11 >seq87603 Length=1014 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||||||| | | ||||| || ||||||||||||||| | ||| ||| | Sbjct 736 CGCAACACCAAATGGAGCGTCGACTCCTTCTGAATGTTGTAGTCGGCTAGGGTTCGCCCA 795 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || |||||||| || |||| | |||| | ||||| || || || || ||||| || || Sbjct 796 TCCTCGAGCTGCTTCCCGGCAAAGATCAATCGCTGCTGGTCGGGCGGAATGCCCTCCTTG 855 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || || | | || | || || | | ||| || || | || | | Sbjct 856 TCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCAGAAGACTCAACCTCCAAGGTGATC 915 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || ||||| || ||||| | ||| |||||||| Sbjct 916 GTCTTGCCAGTTAGGGTTTTCACGAAGATCTGCAT 950 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || |||||||||||||| || |||||| ||| |||||||| ||||| | | Sbjct 529 GACTCCTTCTGAATGTTGTAGTCCGCCAAGGTACGACCATCCTCGAGCTGCTTACCAGCA 588 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | |||||| || || ||||| ||||| || || || || || || | Sbjct 589 AAGATCAAACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTGACA 648 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||||| | | ||| || || | || | || || || || || || || Sbjct 649 TTGTCAATGGTATCAGAAGACTCAACCTCTAGGGTGATTGTCTTGCCCGTGAGCGTCTTG 708 Query 132110 ATGAAAATCTGCATG 132124 | ||||||||||||| Sbjct 709 ACGAAAATCTGCATG 723 >seq50088 Length=882 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||||||| | | ||||| || ||||||||||||||| | ||| ||| | Sbjct 604 CGCAACACCAAATGGAGCGTCGACTCCTTCTGAATGTTGTAGTCGGCTAGGGTTCGCCCA 663 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || |||||||| || |||| | |||| | ||||| || || || || ||||| || || Sbjct 664 TCCTCGAGCTGCTTCCCGGCAAAGATCAATCGCTGCTGGTCGGGCGGAATGCCCTCCTTG 723 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || || | | || | || || | | ||| || || | || | | Sbjct 724 TCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCAGAAGACTCAACCTCCAAGGTGATC 783 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || ||||| || ||||| | ||| |||||||| Sbjct 784 GTCTTGCCAGTTAGGGTTTTCACGAAGATCTGCAT 818 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || |||||||||||||| || |||||| ||| |||||||| ||||| | | Sbjct 397 GACTCCTTCTGAATGTTGTAGTCCGCCAAGGTACGACCATCCTCGAGCTGCTTACCAGCA 456 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | |||||| || || ||||| ||||| || || || || || || | Sbjct 457 AAGATCAAACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTGACA 516 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||||| | | ||| || || | || | || || || || || || || Sbjct 517 TTGTCAATGGTATCAGAAGACTCAACCTCTAGGGTGATTGTCTTGCCCGTGAGCGTCTTG 576 Query 132110 ATGAAAATCTGCATG 132124 | ||||||||||||| Sbjct 577 ACGAAAATCTGCATG 591 >seq44759 Length=4973 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||| ||| | |||| || || ||||||||||||||| | ||| || ||| || Sbjct 4880 ACCAGATGCAACGTTGATTCCTTCTGAATGTTGTAGTCGGCTAGGGTTCGGCCATCCTCC 4821 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| ||||||| |||| |||||||| ||||| || || || ||||| || || Sbjct 4820 AGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCAGGTGGGATACCTTCCTTGTCCTGG 4761 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || || | | || | || |||| ||| ||||| | ||| | || || Sbjct 4760 ATCTTGGCCTTGACGTTGTCAATGGTGTCGGAACTCTCAACTTCCAACGTGATGGTCTTC 4701 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||||| || ||||| | ||| || |||||| Sbjct 4700 CCAGTTAGGGTTTTGACGAAGATTTGCATG 4671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475980202517040