Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq76306 100 4e-15 seq50141 95.1 2e-13 seq60603 93.3 6e-13 >seq76306 Length=4672 Score = 100 bits (110), Expect = 4e-15 Identities = 86/105 (82%), Gaps = 1/105 (1%) Strand=Plus/Minus Query 1456172 CTTTGCCGAGCGGCTCGTCGGCTTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTT 1456230 ||||||||| ||||| | | |||||| |||| |||||||| || ||||| || || || Sbjct 1053 CTTTGCCGAAAGGCTCCTAGCCTTTGCGTGCGTTGAGGGCATATTCTTCTCTGGAAGCTT 994 Query 1456231 CTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 || ||||| || |||||||||||||| ||||||||||| ||||| Sbjct 993 TTGTGCCATTTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGTCT 949 >seq50141 Length=1052 Score = 95.1 bits (104), Expect = 2e-13 Identities = 162/232 (70%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||||||||| |||||||||||||| ||| || | | ||| ||| |||| || Sbjct 630 ATCTACAAGGTACTCAAGCAGGTGCATCCCGACACTGGT-----ATC-TCCTCCAAGGCC 683 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| || |||||||||| |||| | | | | || || || Sbjct 684 ATGGGCATCATGAACAGCTTCATCAACGACATCTTCGA--GAAGCTGGCCCAAGAATCGT 741 Query 725031 CGC--CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 || |||||||||| ||||||| ||| ||| | || ||||||||||| || | Sbjct 742 CGAGGCTGGCGCGCTACAACAAGAAGCCCACCATCACGTCCCGGGAGATCCAGACGGCGG 801 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 | || ||| | | || ||||| |||| ||| |||||||||||||| || Sbjct 802 TCAAGCTCATCCTCCCTGGTGAACTCGCCAAGCATGCCGTCTCCGAGGGAAC 853 >seq60603 Length=6970 Score = 93.3 bits (102), Expect = 6e-13 Identities = 196/286 (69%), Gaps = 10/286 (3%) Strand=Plus/Plus Query 1812932 TCGGTCACGAGCACGTCCGAGATGGCCG-TGCCGATGGGCGCCGCCTGGCCCAGGATGAT 1812990 ||| | | ||||| |||||| | |||| | ||||| ||||| ||| || || ||||| Sbjct 1645 TCGTTGAGGAGCA-GTCCGAAGTCGCCGGTTCCGATAGGCGCAAGCTGTCCGAGCATGAT 1703 Query 1812991 GGGCTCCGTGACCGAGCCGTCGGTGATCTTGTCGGTCTCGGCAAAGGCCGCCGCGTCAAA 1813050 | ||| || || ||| |||| ||||| |||||| || || ||||| || Sbjct 1704 GTTCTCGGTCACTCC-CCGGAGGTG-----GTCGGCCTCGGCGTAGATGGCGGCGTCCAA 1757 Query 1813051 GAGGATGTCGACAGTCTCCTCAAAAGAGGCGCGCGACAGAAAACCGTGGTCGGCGCGGTT 1813110 || |||||||| |||||||| || ||| |||| || ||| |||| |||||| Sbjct 1758 AAGAATGTCGACCGTCTCCTCGAACGAGCAGCGCATCATCGGGCCGGTGTCGTTGCGGTT 1817 Query 1813111 AAAGCCGTGCCGCGTGACGGCCACCAC-TGAGCCGCGGCAACACATGGTGTCGGTGGCCA 1813169 | |||||||| || | |||| | ||| || ||| | |||||| ||| | | Sbjct 1818 GATACCGTGCCGGGTAATCGCCATGAGGTGA-CCACGGTACGTCATGGTATCGCAGAGAA 1876 Query 1813170 GCGCAAAGTGGCGGTCGTTGACATAGGTGCCGTCAAAGGAGATCAC 1813215 |||| ||| |||| ||| || || | |||||| ||||||||||| Sbjct 1877 TGGCAAGGTGACGGTAGTTCACGTACGAGCCGTCGAAGGAGATCAC 1922 Score = 86.0 bits (94), Expect = 9e-11 Identities = 157/225 (70%), Gaps = 10/225 (4%) Strand=Plus/Plus Query 1818067 CCATGGTAAAGGGCGTCACGCGCTCGGGAAAGGTGAGCGTCTTGACGAT-CTCATAGGGC 1818125 |||| || ||||||||||| ||||||||| || || || |||| ||| | || Sbjct 5201 CCATATTATAGGGCGTCACGGTCTCGGGAAACGTCAGGTTCAACGCGATACTC-CATGGT 5259 Query 1818126 ACGCCCACCTCGTCAATGTCAATCTCGGGGTCGGGGCTGATGACGGCGCGCGCGGTAAAG 1818185 || || | ||| || |||| ||| | ||||| ||| | ||||||| || || | ||| Sbjct 5260 ACACCGAGCTCATCGATGTTAATGTTCGGGTCCGGGGTAATGACGGTACGAGCCGAGAAG 5319 Query 1818186 TTGACGCGCTTGCCCATGCAATTGCCGCGGATCCTGCCCTCCTTGCCCTTGAACCGCT-C 1818244 | || ||||| |||||| || || ||||| | ||||||||| |||||| || | Sbjct 5320 TCCACTCGCTTTCCCATGAGGTTACCACGGATACGACCCTCCTTGGCCTTGAGTCGTTGG 5379 Query 1818245 CA---CGAGGCCCTTGGTGGGCTTGCCCGACCGTTGGGTCGACTG 1818286 || ||| |||| ||||| | ||||| ||||| || | ||| Sbjct 5380 CATATCGA----CTTGATGGGCCTACCCGAACGTTGCGTTGCCTG 5420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7167595600030068