Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq44759 102 7e-17 seq50989 100 2e-16 seq85017 86.0 5e-12 seq59239 86.0 5e-12 >seq44759 Length=4973 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||| ||| ||||| || || || ||||| ||||||||| | | | || | || || Sbjct 4880 ACCAGATGCAACGTTGATTCCTTCTGAATGTTGTAGTCGGCTAGGGTTCGGCCATCCTCC 4821 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| ||||||||| | ||||||||||| ||||| || || | ||| || || || | Sbjct 4820 AGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCAGGTGGGATACCTTCCTTGTCCTGG 4761 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | | | || | ||||| | |||||||| | || || | || Sbjct 4760 ATCTTGGCCTTGACGTTGTCAATGGTGTCGGAACTCTCAACTTCCAACGTGATGGTCTTC 4701 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || ||||| || ||||||||||| Sbjct 4700 CCAGTTAGGGTTTTGACGAAGATTTGCAT 4672 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 27044 ATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTG 27103 ||| || || || || ||||| || ||||||||| || | | | ||||| | ||| Sbjct 4419 ATGCAAGGTCGACTCCTTTTGGATGTTGTAGTCGGCCAGCGTCCTACCATCTTCCAACTG 4360 Query 27104 TTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTT 27163 ||||| ||| | ||||||||||| || ||||| || | ||||| || || |||||| Sbjct 4359 CTTACCAGCGAAGATGAGACGCTGCTGGTCCGGTGGAATGCCCTCCTTGTCCTGGATCTT 4300 Query 27164 GTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGT 27223 | || | | | || | ||||| | | || || || || || || | |||||| || Sbjct 4299 GGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATGGTTTTGCCGGT 4240 Query 27224 CAGAGTTTTCACAAAGATTTGCAT 27247 || || ||||| ||||| ||||| Sbjct 4239 GAGCGTCTTCACGAAGATCTGCAT 4216 >seq50989 Length=854 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| ||||| || ||||| || || || ||||| ||||||||| | | | || | Sbjct 487 CGCAGTACCAGGTGCAACGTCGACTCCTTCTGAATGTTGTAGTCGGCTAGGGTACGGCCA 546 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 || |||||||| ||||| ||| | ||||||||||| || || || || | |||||| || Sbjct 547 TCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGTGGGATACCCTCCTTG 606 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||||| || | | | || | ||||| | | || || || || || || Sbjct 607 TCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAAGACTCGACCTCAAGGGTGATG 666 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || ||||| || ||||| ||||| Sbjct 667 GTCTTCCCGGTTAGGGTTTTGACGAAGATCTGCAT 701 >seq85017 Length=850 Score = 86.0 bits (94), Expect = 5e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| ||||| || ||||| || || || ||||| ||||||||| | | | || | Sbjct 683 CGCAGTACCAGGTGCAACGTCGACTCCTTCTGAATGTTGTAGTCGGCTAGGGTACGGCCA 742 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 || |||||||| ||||| ||| | ||||||||||| || || || || | |||||| || Sbjct 743 TCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGTGGGATACCCTCCTTG 802 Query 27153 TCGGCGATCTTG 27164 || ||||||| Sbjct 803 TCCTGGATCTTG 814 >seq59239 Length=983 Score = 86.0 bits (94), Expect = 5e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| ||||| || ||||| || || || ||||| ||||||||| | | | || | Sbjct 816 CGCAGTACCAGGTGCAACGTCGACTCCTTCTGAATGTTGTAGTCGGCTAGGGTACGGCCA 875 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 || |||||||| ||||| ||| | ||||||||||| || || || || | |||||| || Sbjct 876 TCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGTGGGATACCCTCCTTG 935 Query 27153 TCGGCGATCTTG 27164 || ||||||| Sbjct 936 TCCTGGATCTTG 947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424385883256368