Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq52188 93.3 5e-14 >seq52188 Length=8849 Score = 93.3 bits (102), Expect = 5e-14 Identities = 212/319 (66%), Gaps = 10/319 (3%) Strand=Plus/Plus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 || ||||||||||| ||||| | || || || || || || | || |||||| | Sbjct 3498 AATCCATCCATCTCCGTGAGCAGCTGGTTGATCGTCTGCTCGCGTTCGTCATTTCCACCG 3557 Query 11600 ATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACAT 11659 | |||||| | | ||| | ||||| ||||| |||||||| ||||| ||||| || Sbjct 3558 CCAAGACCAGCGCCTCTCTGCCTCCCCACAGCATCGATCTCATCTATGAAAACAATGCAG 3617 Query 11660 GG-----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACAC 11714 || ||||||| ||| | || || || || || |||| ||||| |||| Sbjct 3618 GGAGCCTTTGATTT-----GGCCTTCTCGAACAGGTCCCGGACCCGAGAAGCACCGACAC 3672 Query 11715 CAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCAC 11774 | || |||| ||| || || | | || | ||| || ||| ||||| | ||||| Sbjct 3673 CGACGAACAGCTCGACGAACTCGGACGCCGCACACGAGAAGAACGGGACGCCGGCTTCAC 3732 Query 11775 CCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGC 11834 | || | ||||| || || | ||||| || || ||||| ||| |||| ||| | Sbjct 3733 CGGCTACTGCTCGAGCCAGCAACGTCTTCCCAGTTCCTGGAGGACCAACGAGCAGGCAAC 3792 Query 11835 CTCGGGGGATCTTGGCACC 11853 | ||| ||||||||||| Sbjct 3793 CCTTGGGAATCTTGGCACC 3811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627200532734400