Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq76306 136 5e-27 seq43626 82.4 9e-11 >seq76306 Length=4672 Score = 136 bits (150), Expect = 5e-27 Identities = 119/148 (80%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 |||||| |||||||| || |||||||| || |||||||||| ||||| |||||||| || Sbjct 906 GTGGAGCCCCTCGTCCCGAGAGATGAGCTCGTTCGAGAAGCTTAGACCAGGCATGAGGCC 965 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 |||||||| | ||||||||| |||||||| ||||||||||| || ||||| || || Sbjct 966 TCGCTTCTTGAGCCAGAAAATGGCACAAAAGCTTCCAGAGAAGAATATGCCCTCAACGCA 1025 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAG 130174 ||| || || | ||| | || |||||| Sbjct 1026 CGCAAAGGCTAGGAGCCTTTCGGCAAAG 1053 >seq43626 Length=2916 Score = 82.4 bits (90), Expect = 9e-11 Identities = 187/279 (67%), Gaps = 2/279 (1%) Strand=Plus/Plus Query 14150 TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCA 14209 || |||||||||||||| || | || || || | || || || |||||||| || || Sbjct 1660 TCGAAGCCATCCATCTCCGTGAGAAGCTGGTTCAAAGTCTGCTCCCGTTCATCGTTACCA 1719 Query 14210 GGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 14269 | ||| |||| ||||| ||||| || ||||| || || | ||| ||||| Sbjct 1720 CCCCCGATACCGGCACCTCGTTGACGTCCGACTGCATCAATCTCGTCCACGAACACGATG 1779 Query 14270 CATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 14329 || ||| | | || || || || | || || ||||| ||||| || || Sbjct 1780 CAAGGTGCACTCTCTTTCGCCTTTTTGAACAAGTCCCGTACTCTAGAAGCACCAACCCCT 1839 Query 14330 ACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACC 14388 || || | ||||||||| | || | | | || | || || |||||| || ||| || Sbjct 1840 ACGAAAACCTCCACAAACTCGGAACCCG-ATATCGAGAAAAATGGGACGCCAGCTTCCCC 1898 Query 14389 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 ||||||||| ||| || ||||| ||||| ||||| || Sbjct 1899 AGCGATGGCTTTGGCCAGAAGGGTTTTCCCAGTCCCAGG 1937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617616438177840