Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq76306 150 2e-31 seq52188 91.5 2e-13 >seq76306 Length=4672 Score = 150 bits (166), Expect = 2e-31 Identities = 122/148 (82%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 |||||| || | ||| | || |||||||| |||||||| || ||||||||||| ||| Sbjct 1053 CTTTGCCGAAAGGCTCCTAGCCTTTGCGTGCGTTGAGGGCATATTCTTCTCTGGAAGCTT 994 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 || || |||| ||||||||||||||||| |||||||| ||||| ||||||| ||||| Sbjct 993 TTGTGCCATTTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGTCTAAGCTTCTCGAACGA 934 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||| |||||||| |||||||| |||||| Sbjct 933 GCTCATCTCTCGGGACGAGGGGCTCCAC 906 >seq52188 Length=8849 Score = 91.5 bits (100), Expect = 2e-13 Identities = 214/321 (67%), Gaps = 14/321 (4%) Strand=Plus/Plus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTG 9671 || ||||||||||| || | || ||||| || || || || ||||| ||||| | | | Sbjct 3498 AATCCATCCATCTCCGTGAGCAGCTGGTTGATCGTCTGCTCGCGTTCGTCATTTCCACCG 3557 Query 9672 GCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 9731 || |||||| | | ||| | ||||| ||||| |||||||| ||||| || |||| Sbjct 3558 CCAAG--ACCAGCGCCTCTCTGCCTCCCCACAGCATCGATCTCATCTATGAAAACAATGC 3615 Query 9732 ATGG-----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCAC 9786 | || ||||||| || || || || ||||| || || || || || Sbjct 3616 AGGGAGCCTTTGATTTG-----GCCTTCTCGAACAGGTCCCGGACCCGAGAAGCACCGAC 3670 Query 9787 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 9846 ||| || |||| ||| || || | | || | ||| || ||| ||||| | ||| Sbjct 3671 ACCGACGAACAGCTCGACGAACTCGGACGCCGCACACGAGAAGAACGGGACGCCGGCTTC 3730 Query 9847 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 9906 ||| || | ||||| || || | ||||| || || ||||| ||| |||| ||| Sbjct 3731 ACCGGCTACTGCTCGAGCCAGCAACGTCTTCCCAGTTCCTGGAGGACCAACGAGCAGGCA 3790 Query 9907 ACCTCGTGGAATCTTGGCGCC 9927 ||| ||||||||||| || Sbjct 3791 ACCCTTGGGAATCTTGGCACC 3811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582488606445360