Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq76306 138 1e-27 seq103020 87.8 2e-12 seq95935 82.4 8e-11 >seq76306 Length=4672 Score = 138 bits (152), Expect = 1e-27 Identities = 118/146 (81%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 ||||| || | ||| |||| ||||| ||||| || || || ||||||||||| || Sbjct 1052 TTTGCCGAAAGGCTCCTAGCCTTTGCGTGCGTTGAGGGCATATTCTTCTCTGGAAGCTTT 993 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 ||||| |||||||||||||| ||||| ||||||||||| || || || ||||| |||||| Sbjct 992 TGTGCCATTTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGTCTAAGCTTCTCGAACGAG 933 Query 60093 CTGATTTCCCGGGACGAGGGCCTCCA 60118 || || || ||||||||||| ||||| Sbjct 932 CTCATCTCTCGGGACGAGGGGCTCCA 907 >seq103020 Length=5539 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/130 (75%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 79048 AGGCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATT 79107 ||||| |||||||| |||||||| || || ||||| ||||| | ||| | ||| Sbjct 3680 AGGCA-AGCGATGCTAGGTTGCAAACCGCGGTCTCAGATGGGCTCGTGTACTCAACGATC 3738 Query 79108 TCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTA 79167 || ||||||| || || | |||||||| || | ||| ||||||||||||||| ||| Sbjct 3739 TCGGTGCACAGGTTCGAGCATTTGATGGTTCCAAGGTTTTTCTGGTTGCTCTTCCTGTTG 3798 Query 79168 CAGGCGTCCT 79177 || ||||||| Sbjct 3799 CAAGCGTCCT 3808 >seq95935 Length=4297 Score = 82.4 bits (90), Expect = 8e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 78534 GTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGA 78593 ||||||||| | |||||||||||||| |||||| || || | |||||| ||| || Sbjct 1417 GTAGATGTTTGAGGTGTACGGCTCGAAGCACTCGTTATTGCCGAGGATCTGACTGGTGGA 1358 Query 78594 GGCGGTCGGCATGGGTGCGACCAGTAGAGAATT 78626 ||||| ||||||||||| ||||| ||||| || Sbjct 1357 CGCGGTGGGCATGGGTGCAACCAGCAGAGAGTT 1325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547798594304160