Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq102493 84.2 2e-11 seq81997 84.2 2e-11 seq95935 82.4 8e-11 seq53608 82.4 8e-11 >seq102493 Length=5880 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 79622 GACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACC 79680 ||||||| || |||| || || |||| ||||||||||||||||||||||||||| ||| Sbjct 5122 GACTGCTCTCACTGAGATTCGAACTCAGGACCTCCCGCTTACTAAACGGGTGCTCTAACC 5181 Query 79681 AATTGAGCTACGAAAGCA 79698 || ||||||| || |||| Sbjct 5182 AACTGAGCTATGAGAGCA 5199 >seq81997 Length=366 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 144 TGCTTTCACTGAGAGTCGAACTCAGGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 203 Query 79684 TGAGCTACGAAAGCAA 79699 ||||||| |||||||| Sbjct 204 TGAGCTATGAAAGCAA 219 >seq95935 Length=4297 Score = 82.4 bits (90), Expect = 8e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 55487 AACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAAC 55546 ||||| ||||| || || || ||||| |||||||| || ||||||| | ||||| ||| Sbjct 1325 AACTCTCTGCTGGTTGCACCCATGCCCACCGCGTCCACCAGTCAGATCCTCGGCAATAAC 1384 Query 55547 GAGGCGTTCGAGCCGTACACGACCAACATCTAC 55579 ||| |||||||||||||| | ||||||||| Sbjct 1385 GAGTGCTTCGAGCCGTACACCTCAAACATCTAC 1417 >seq53608 Length=7438 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 152812 TCGGTCATGATCATCAGACGACCGTAGCGCAG-GTCACG-TAGTGACCCGTAGACCTTTC 152869 || ||||||||||||||| |||||||||| || | | | || | | ||||| |||| | Sbjct 2776 TCAGTCATGATCATCAGATGACCGTAGCGTAGCGACTTGATATT--CTCGTAGTCCTTGC 2719 Query 152870 CATGTTGAAGCCCGAGGATCTTTTTGAGGTTGGAAAATTCCTCATTATCGGTCACCTGTT 152929 |||||||||| || | || |||| ||| | || ||||||| | | ||| | Sbjct 2718 CATGTTGAAGTCCCAATATGCGCTTGATATTGTTGATCTCAGCATTATCCATGATCTGCT 2659 Query 152930 TCACCGTGGCATCCCGAACATTGCGCGGCTTTCCCCGGAGTGGAAACACGCCGAACGCGT 152989 | ||| ||||| || || ||| || ||||||| | ||| |||||||| ||| | || Sbjct 2658 TGTGCGTCGCATCGCGTACGTTGAGCAGCTTTCCTCTGAGCGGAAACACTCCGTAATGGT 2599 Query 152990 TGCGGCCTACAACGCT 153005 | || || || || || Sbjct 2598 TTCGCCCGACGACACT 2583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546491527057200