Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq87603 140 2e-28 seq50088 140 2e-28 seq102373 105 4e-18 seq85017 100 2e-16 seq59239 100 2e-16 seq50989 100 2e-16 seq44759 96.9 2e-15 >seq87603 Length=1014 Score = 140 bits (154), Expect = 2e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || ||||||||||||||||||||||| || |||||| |||||||| || || | Sbjct 723 GCCACCCCTAAGACGCAACACCAAATGGAGCGTCGACTCCTTCTGAATGTTGTAGTCGGC 782 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || |||||| | || || || || || |||||||| || || ||||| ||||| ||||| Sbjct 783 TAGGGTTCGCCCATCCTCGAGCTGCTTCCCGGCAAAGATCAATCGCTGCTGGTCGGGCGG 842 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| |||| || | || ||| | || ||||| ||| | Sbjct 843 AATGCCCTCCTTGTCCTGGATC-TTGGCCTTGACGTTGTCGATCGTGTCAGAAGACTCAA 901 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | |||| ||| ||||| || || |||| |||||||| || |||||||| Sbjct 902 CCTCCAAGGTGATCGTCTTGCCAGTTAGGGTTTTCACGAAGATCTGCAT 950 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | ||| || | ||||| ||| |||||| |||||| |||||||| || || | Sbjct 495 GCCTCCGCGAAGGCGGAGCACCAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGC 554 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | || || | || || || || ||||| ||||| || |||||||| ||||| || || Sbjct 555 CAAGGTACGACCATCCTCGAGCTGCTTACCAGCAAAGATCAAACGCTGCTGGTCAGGAGG 614 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| |||||| | || || | ||| || || ||| | Sbjct 615 AATGCCCTCCTTGTCCTGGATCTTA-GCCTTGACATTGTCAATGGTATCAGAAGACTCAA 673 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || | ||| || || || || || | ||| || || |||||||||||| Sbjct 674 CCTCTAGGGTGATTGTCTTGCCCGTGAGCGTCTTGACGAAAATCTGCATG 723 >seq50088 Length=882 Score = 140 bits (154), Expect = 2e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || ||||||||||||||||||||||| || |||||| |||||||| || || | Sbjct 591 GCCACCCCTAAGACGCAACACCAAATGGAGCGTCGACTCCTTCTGAATGTTGTAGTCGGC 650 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || |||||| | || || || || || |||||||| || || ||||| ||||| ||||| Sbjct 651 TAGGGTTCGCCCATCCTCGAGCTGCTTCCCGGCAAAGATCAATCGCTGCTGGTCGGGCGG 710 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| |||| || | || ||| | || ||||| ||| | Sbjct 711 AATGCCCTCCTTGTCCTGGATC-TTGGCCTTGACGTTGTCGATCGTGTCAGAAGACTCAA 769 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | |||| ||| ||||| || || |||| |||||||| || |||||||| Sbjct 770 CCTCCAAGGTGATCGTCTTGCCAGTTAGGGTTTTCACGAAGATCTGCAT 818 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | ||| || | ||||| ||| |||||| |||||| |||||||| || || | Sbjct 363 GCCTCCGCGAAGGCGGAGCACCAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGC 422 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | || || | || || || || ||||| ||||| || |||||||| ||||| || || Sbjct 423 CAAGGTACGACCATCCTCGAGCTGCTTACCAGCAAAGATCAAACGCTGCTGGTCAGGAGG 482 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| |||||| | || || | ||| || || ||| | Sbjct 483 AATGCCCTCCTTGTCCTGGATCTTA-GCCTTGACATTGTCAATGGTATCAGAAGACTCAA 541 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || | ||| || || || || || | ||| || || |||||||||||| Sbjct 542 CCTCTAGGGTGATTGTCTTGCCCGTGAGCGTCTTGACGAAAATCTGCATG 591 >seq102373 Length=7923 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | ||| || | ||||| ||| |||||| |||||| |||||||| || || | Sbjct 7470 GCCTCCACGAAGGCGAAGCACCAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGC 7529 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | || || | || || | || || |||||||| || |||||||| || ||||| || Sbjct 7530 TAAGGTACGACCATCCTCCAACTGCTTCCCGGCAAAGATCAAACGCTGCTGATCCGGAGG 7589 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| |||| || | || ||| | || || || ||||| | Sbjct 7590 AATGCCCTCCTTGTCCTGGATC-TTGGCCTTGACGTTGTCGATGGTATCCGAACTCTCGA 7648 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || | ||| || || ||||| |||| |||||||| || ||||||||| Sbjct 7649 CCTCTAGGGTGATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATG 7698 >seq85017 Length=850 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||| ||||||||| |||||| || ||||| || || | ||| || || Sbjct 224 AGACGGAGAACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGG 283 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || || || || || | |||||| ||||| || || | ||| ||| Sbjct 284 CCATCCTCCAGCTGCTTCCCTGCGAAGATGAGACGCTGCTGGTCAGGAGGAATTCCTTCC 343 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||||| | |||||| | ||| || || ||||| || |||| ||| Sbjct 344 TTGTCCTGGATCTTG-GCCTTAACGTTGTCAATAGTATCGGAACTCTCAACCTCCAAGGT 402 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | || ||||| ||||||||||| Sbjct 403 GATGGTCTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 441 >seq59239 Length=983 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||| ||||||||| |||||| || ||||| || || | ||| || || Sbjct 357 AGACGGAGAACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGG 416 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || || || || || | |||||| ||||| || || | ||| ||| Sbjct 417 CCATCCTCCAGCTGCTTCCCTGCGAAGATGAGACGCTGCTGGTCAGGAGGAATTCCTTCC 476 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||||| | |||||| | ||| || || ||||| || |||| ||| Sbjct 477 TTGTCCTGGATCTTG-GCCTTAACGTTGTCAATAGTATCGGAACTCTCAACCTCCAAGGT 535 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | || ||||| ||||||||||| Sbjct 536 GATGGTCTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 574 >seq50989 Length=854 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||| ||||||||| |||||| || ||||| || || | ||| || || Sbjct 28 AGACGGAGAACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGG 87 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || || || || || | |||||| ||||| || || | ||| ||| Sbjct 88 CCATCCTCCAGCTGCTTCCCTGCGAAGATGAGACGCTGCTGGTCAGGAGGAATTCCTTCC 147 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||||| | |||||| | ||| || || ||||| || |||| ||| Sbjct 148 TTGTCCTGGATCTTG-GCCTTAACGTTGTCAATAGTATCGGAACTCTCAACCTCCAAGGT 206 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | || ||||| ||||||||||| Sbjct 207 GATGGTCTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 245 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || ||||||| |||| || | || |||||| |||||||| || || | Sbjct 475 CCACCCCTGAGACGCAGTACCAGGTGCAACGTCGACTCCTTCTGAATGTTGTAGTCGGCT 534 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || || || ||||| || || || | |||||| ||||| || || Sbjct 535 AGGGTACGGCCATCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGTGGG 594 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||| || | || ||| | ||| ||||| ||| || Sbjct 595 ATACCCTCCTTGTCCTGGATC-TTGGCCTTGACGTTGTCAATGGTGTCAGAAGACTCGAC 653 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || | ||| || || || ||||||| ||||| || || ||||||||| Sbjct 654 CTCAAGGGTGATGGTCTTCCCGGTTAGGGTTTTGACGAAGATCTGCATG 702 >seq44759 Length=4973 Score = 96.9 bits (106), Expect = 2e-15 Identities = 164/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || ||||| | || | ||| | || ||||||||| ||||| || || | Sbjct 4443 GCCTCCCCTGAGACGAAGGACAAGATGCAAGGTCGACTCCTTTTGGATGTTGTAGTCGGC 4384 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || | | ||||| | || ||||| || || || | |||||| |||||||| || Sbjct 4383 CAGCGTCCTACCATCTTCCAACTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGTGG 4324 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| |||| || | || ||| | || ||||| ||||| Sbjct 4323 AATGCCCTCCTTGTCCTGGATC-TTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCA 4265 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGAT 34712 | || | ||| || ||||| ||||| | ||| ||||| || |||||||||||||| Sbjct 4264 CCTCAAGGGTGATGGTTTTGCCGGTGAGCGTCTTCACGAAGATCTGCATGTTGAT 4210 Score = 96.9 bits (106), Expect = 2e-15 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || || || |||||| || ||||| || || | || ||||| Sbjct 4661 AGACGAAGCACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGG 4602 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || ||||| ||||| || || ||||| ||||| || || | |||||| Sbjct 4601 CCATCCTCGAGCTGCTTACCAGCAAAGATCAACCGCTGCTGGTCGGGGGGTATACCCTCC 4542 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || ||| || || ||||| |||||| || || | ||| Sbjct 4541 TTGTCCTGGATC-TTGGCCTTGACGTTATCGATCGTGTCGGAGCTCTCGACCTCGAGGGT 4483 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || |||| || || || || ||||||||| Sbjct 4482 GATGGTCTTGCCAGTTAGGGTCTTGACGAAGATCTGCATG 4443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314323338573962