Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq44759 132 4e-26 seq87603 122 8e-23 seq50088 122 8e-23 seq50989 114 1e-20 seq102373 105 6e-18 seq1166 95.1 1e-14 >seq44759 Length=4973 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || |||||||| | || || ||||| ||||| | || Sbjct 4215 CATGCAGATCTTCGTGAAGACGCTCACCGGCAAAACCATCACCCTTGAGGTGGAGTCTTC 4274 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | ||||| || || || ||||| || ||||| ||||| || || Sbjct 4275 GGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCACCGGACCA 4334 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||| || || || |||||||| || ||| | |||| ||||| Sbjct 4335 GCAGCGTCTCATCTTCGCTGGTAAGCAGTTGGAAGATGGTAGGACGCTGGCCGACTACAA 4394 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| ||||||||||||||||| ||| | || | ||| | |||| ||||| Sbjct 4395 CATCCAAAAGGAGTCGACCTTGCATCTTGTCCTTCGTCTCAGGGGAGGCAT 4445 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || ||||| || || || ||| | || || | ||||| || || Sbjct 4671 CATGCAAATCTTCGTCAAAACCCTAACTGGGAAGACCATCACGTTGGAAGTTGAGAGTTC 4730 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | ||||| | ||||| || || || ||||| ||||| || ||||| ||||| Sbjct 4731 CGACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGTATCCCACCTGATCA 4790 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | |||||| || || |||| || | ||| | |||| ||||| Sbjct 4791 GCAGCGTCTCATCTTCGCCGGTAAGCAGCTGGAGGATGGCCGAACCCTAGCCGACTACAA 4850 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| ||||| || || || ||| |||| | ||| || ||||||| || Sbjct 4851 CATTCAGAAGGAATCAACGTTGCATCTGGTCCTTCGTCTGAGGGGTGGTAT 4901 >seq87603 Length=1014 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || |||||| | || || | || || || | || Sbjct 950 ATGCAGATCTTCGTGAAAACCCTAACTGGCAAGACGATCACCTTGGAGGTTGAGTCTTCT 891 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | ||||| || || || ||||| || ||||| || ||||| || Sbjct 890 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCCGACCAG 831 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | ||||| || || | || || | ||| | |||| |||||| Sbjct 830 CAGCGATTGATCTTTGCCGGGAAGCAGCTCGAGGATGGGCGAACCCTAGCCGACTACAAC 771 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||||||||| | |||||||| |||||| | |||||||||| Sbjct 770 ATTCAGAAGGAGTCGACGCTCCATTTGGTGTTGCGTCTTAGGGGTGGCAT 721 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || || |||||| | || || || || || || | || Sbjct 723 CATGCAGATTTTCGTCAAGACGCTCACGGGCAAGACAATCACCCTAGAGGTTGAGTCTTC 664 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | ||||| | ||||| || || || ||||| || ||||| || || || || Sbjct 663 TGATACCATTGACAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCA 604 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||||| || | || || || || | || || || ||| | | || ||||| Sbjct 603 GCAGCGTTTGATCTTTGCTGGTAAGCAGCTCGAGGATGGTCGTACCTTGGCGGACTACAA 544 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGT 27196 |||||| |||||||| || | ||| |||| Sbjct 543 CATTCAGAAGGAGTCCACTCTTCATCTGGT 514 >seq50088 Length=882 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || |||||| | || || | || || || | || Sbjct 818 ATGCAGATCTTCGTGAAAACCCTAACTGGCAAGACGATCACCTTGGAGGTTGAGTCTTCT 759 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | ||||| || || || ||||| || ||||| || ||||| || Sbjct 758 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCCGACCAG 699 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | ||||| || || | || || | ||| | |||| |||||| Sbjct 698 CAGCGATTGATCTTTGCCGGGAAGCAGCTCGAGGATGGGCGAACCCTAGCCGACTACAAC 639 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||||||||| | |||||||| |||||| | |||||||||| Sbjct 638 ATTCAGAAGGAGTCGACGCTCCATTTGGTGTTGCGTCTTAGGGGTGGCAT 589 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || || |||||| | || || || || || || | || Sbjct 591 CATGCAGATTTTCGTCAAGACGCTCACGGGCAAGACAATCACCCTAGAGGTTGAGTCTTC 532 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | ||||| | ||||| || || || ||||| || ||||| || || || || Sbjct 531 TGATACCATTGACAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCA 472 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||||| || | || || || || | || || || ||| | | || ||||| Sbjct 471 GCAGCGTTTGATCTTTGCTGGTAAGCAGCTCGAGGATGGTCGTACCTTGGCGGACTACAA 412 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGT 27196 |||||| |||||||| || | ||| |||| Sbjct 411 CATTCAGAAGGAGTCCACTCTTCATCTGGT 382 >seq50989 Length=854 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || ||||| || ||||| ||| | || || ||||| || || | || Sbjct 702 CATGCAGATCTTCGTCAAAACCCTAACCGGGAAGACCATCACCCTTGAGGTCGAGTCTTC 643 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | ||||| || || || ||||| || || || ||||| || || Sbjct 642 TGACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCACCTGACCA 583 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||| || || || | || || | ||| | |||| ||||| Sbjct 582 GCAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGTACCCTAGCCGACTACAA 523 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| ||||||||||| || || |||| ||||| | ||||||| || Sbjct 522 CATTCAGAAGGAGTCGACGTTGCACCTGGTACTGCGTCTCAGGGGTGGTAT 472 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || || || ||||| || || || || || ||||| || ||| | || | ||| || || Sbjct 845 AAGATCCAGGACAAGGAGGGTATCCCCCCGGATCAGCAACGTCTCATCTTCGCTGGTAAG 786 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 || ||||| || || ||| | |||| ||||||||||| ||||||||||| || || Sbjct 785 CAGTTGGAGGATGGTAGGACGTTGGCCGACTACAACATTCAGAAGGAGTCGACGTTGCAC 726 Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| | ||| |||| |||||||| Sbjct 725 CTGGTGCTTCGTCTGCGTGGTGGCAT 700 >seq102373 Length=7923 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26990 GCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGA 27049 ||| || || || || ||||| || || ||| | ||||| || || || || | || || Sbjct 7923 GCAAATCTTCGTGAAGACTCTCACGGGTAAGACCATTACCCTAGAGGTTGAGTCTTCGGA 7864 Query 27050 CTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACA 27109 | ||||| | ||||| || || |||||||| || ||||| || || ||||| || Sbjct 7863 TACCATTGACAACGTCAAGGCTAAGATCCAAGACAAGGAGGGCATTCCTCCGGATCAGCA 7804 Query 27110 GCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACAT 27169 | | || || | ||| ||||| || |||| || | ||| | |||| |||||||| Sbjct 7803 GAGATTGATCTTCGCGGGCAAGCAGCTGGAGGATGGACGAACCCTAGCCGACTACAACAT 7744 Query 27170 TCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| | ||| |||| | ||| | |||||||||| Sbjct 7743 CCAGAAGGAGTCGACGCTCCATCTGGTGCTCCGTCTCAGGGGTGGCAT 7696 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || ||||| || || || ||| | || || || || || || || Sbjct 7698 CATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATCACCCTAGAGGTCGAGAGTTC 7639 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | || || | ||||| || || || ||||| || ||||| || || ||||| Sbjct 7638 GGATACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCGGATCA 7579 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||||| || | ||||| || || ||||| || || ||| | | || ||||| Sbjct 7578 GCAGCGTTTGATCTTTGCCGGGAAGCAGTTGGAGGATGGTCGTACCTTAGCGGACTACAA 7519 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGT 27196 |||||| |||||||| || | ||| |||| Sbjct 7518 CATTCAGAAGGAGTCCACTCTTCATCTGGT 7489 >seq1166 Length=240 Score = 95.1 bits (104), Expect = 1e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 27036 GTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATA 27095 || ||| | |||||| |||| || | ||||| || || || || || || ||||| Sbjct 239 GTTGAATCCTCCGACACGATCGACAATGTCAAGGCCAAGATCCAGGATAAGGAGGGCATC 180 Query 27096 CCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT 27155 || |||||||| ||||| || || | ||| || || |||||||| || | ||| | Sbjct 179 CCGCCCGATCAGCAGCGATTGATCTTCGCTGGTAAGCAATTGGAGGAAGGGAGGACGTTG 120 Query 27156 TCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCG 27202 | ||||||||||| || ||||||||||| | ||| |||| ||||| Sbjct 119 GCGGATTACAACATCCAGAAGGAGTCGACGCTTCATCTGGTGTTGCG 73 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434342600657280