Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq87603 105 6e-18 seq50088 105 6e-18 >seq87603 Length=1014 Score = 105 bits (116), Expect = 6e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| || || | || ||||||||||| ||||| ||| || || || || || || Sbjct 720 CATGCCACCCCTAAGACGCAACACCAAATGGAGCGTCGACTCCTTCTGAATGTTGTAGTC 779 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 ||| || ||||| | || || ||||| || || ||||| || | ||||||||||||| Sbjct 780 GGCTAGGGTTCGCCCATCCTCGAGCTGCTTCCCGGCAAAGATCAATCGCTGCTGGTCGGG 839 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACT 39232 || | || ||| |||||| ||| || |||| ||| | | | ||| || |||| Sbjct 840 CGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATCGTGTCAGAAGACT 898 Query 39233 CCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || |||| ||||| | || || || || ||||| || ||||| ||||| Sbjct 899 CAACCTCCAAGGTGATCGTCTTGCCAGTTAGGGTTTTCACGAAGATCTGCAT 950 >seq50088 Length=882 Score = 105 bits (116), Expect = 6e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| || || | || ||||||||||| ||||| ||| || || || || || || Sbjct 588 CATGCCACCCCTAAGACGCAACACCAAATGGAGCGTCGACTCCTTCTGAATGTTGTAGTC 647 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 ||| || ||||| | || || ||||| || || ||||| || | ||||||||||||| Sbjct 648 GGCTAGGGTTCGCCCATCCTCGAGCTGCTTCCCGGCAAAGATCAATCGCTGCTGGTCGGG 707 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACT 39232 || | || ||| |||||| ||| || |||| ||| | | | ||| || |||| Sbjct 708 CGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATCGTGTCAGAAGACT 766 Query 39233 CCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || |||| ||||| | || || || || ||||| || ||||| ||||| Sbjct 767 CAACCTCCAAGGTGATCGTCTTGCCAGTTAGGGTTTTCACGAAGATCTGCAT 818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428991130995482