Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq87603 93.3 3e-14 seq50088 93.3 3e-14 seq85017 86.0 4e-12 seq59239 86.0 4e-12 seq50989 86.0 4e-12 >seq87603 Length=1014 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || |||||||| || || ||||| || || ||||| || | Sbjct 722 ATGCAGATTTTCGTCAAGACGCTCACGGGCAAGACAATCACCCTAGAGGTTGAGTCTTCT 663 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | || || ||||| || || | || || || || Sbjct 662 GATACCATTGACAATGTCAAGGC-TAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCA 604 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||||| || ||||| || || || || || || | || || || | || ||||| Sbjct 603 GCAGCGTTTGATCTTTGCTGGTAAGCAGCTCGAGGATGGTCGTACCTTGGCGGACTACAA 544 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 543 CATTCAGAAGGAGTCCAC 526 >seq50088 Length=882 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || |||||||| || || ||||| || || ||||| || | Sbjct 590 ATGCAGATTTTCGTCAAGACGCTCACGGGCAAGACAATCACCCTAGAGGTTGAGTCTTCT 531 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | || || ||||| || || | || || || || Sbjct 530 GATACCATTGACAATGTCAAGGC-TAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCA 472 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||||| || ||||| || || || || || || | || || || | || ||||| Sbjct 471 GCAGCGTTTGATCTTTGCTGGTAAGCAGCTCGAGGATGGTCGTACCTTGGCGGACTACAA 412 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 411 CATTCAGAAGGAGTCCAC 394 >seq85017 Length=850 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || ||||| ||||| || ||||| | || ||||| | Sbjct 441 ATGCAGATTTTCGTGAAGACTCTCACTGGAAAGACCATCACCTTGGAGGTTGAGAGTTCC 382 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||| || |||| | || || ||||| ||||| | || || || || Sbjct 381 GATACTATTGACAACGTTAAGGC-CAAGATCCAGGACAAGGAAGGAATTCCTCCTGACCA 323 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || || || || || ||||| || | ||||| | | ||| ||||| Sbjct 322 GCAGCGTCTCATCTTCGCAGGGAAGCAGCTGGAGGATGGCCGCACCCTTGCCGACTACAA 263 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| || || ||||| || | ||| | ||| | | |||| || ||| Sbjct 262 CATCCAGAAGGAGTCTACTCTCCATCTGGTTCTCCGTCTGCGTGGTGGA 214 >seq59239 Length=983 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || ||||| ||||| || ||||| | || ||||| | Sbjct 574 ATGCAGATTTTCGTGAAGACTCTCACTGGAAAGACCATCACCTTGGAGGTTGAGAGTTCC 515 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||| || |||| | || || ||||| ||||| | || || || || Sbjct 514 GATACTATTGACAACGTTAAGGC-CAAGATCCAGGACAAGGAAGGAATTCCTCCTGACCA 456 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || || || || || ||||| || | ||||| | | ||| ||||| Sbjct 455 GCAGCGTCTCATCTTCGCAGGGAAGCAGCTGGAGGATGGCCGCACCCTTGCCGACTACAA 396 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| || || ||||| || | ||| | ||| | | |||| || ||| Sbjct 395 CATCCAGAAGGAGTCTACTCTCCATCTGGTTCTCCGTCTGCGTGGTGGA 347 >seq50989 Length=854 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || ||||| ||||| || ||||| | || ||||| | Sbjct 245 ATGCAGATTTTCGTGAAGACTCTCACTGGAAAGACCATCACCTTGGAGGTTGAGAGTTCC 186 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||| || |||| | || || ||||| ||||| | || || || || Sbjct 185 GATACTATTGACAACGTTAAGGC-CAAGATCCAGGACAAGGAAGGAATTCCTCCTGACCA 127 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || || || || || ||||| || | ||||| | | ||| ||||| Sbjct 126 GCAGCGTCTCATCTTCGCAGGGAAGCAGCTGGAGGATGGCCGCACCCTTGCCGACTACAA 67 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| || || ||||| || | ||| | ||| | | |||| || ||| Sbjct 66 CATCCAGAAGGAGTCTACTCTCCATCTGGTTCTCCGTCTGCGTGGTGGA 18 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337573288124312