Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq95781 102 1e-16 >seq95781 Length=6618 Score = 102 bits (112), Expect = 1e-16 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 176163 GACGATCAGTATATTCTGGATGCTGCTGAGGAAGCAGGAGTTGAACTCAACTACTCGTGC 176222 ||||| |||| |||||||| || || |||| || || | || | ||||||||| Sbjct 3776 GACGACGAGTACATTCTGGACGCCGCAGAGGCGGCGGGCATCGACGTTCCATACTCGTGC 3717 Query 176223 CGCGCTGGTGCCTGTTCGAGTTGTGCAGGAAAACTCATCTCGGGCACGGTAGATCAAAGC 176282 || || ||||| || | | || | || ||| || |||| || || ||||||||| | Sbjct 3716 CGTGCCGGTGCGTGCTGCACCTGCGTGGGGAAAATCGTCTCTGGAACTGTAGATCAATCC 3657 Query 176283 GATCAATCGTTCCTTGATGATGACCAGATCGATGCA--GGTTTCATTCTGACTTGTGTTT 176340 ||| |||||||| |||||||| |||| || ||| || | | | || ||||| || Sbjct 3656 GATGGTTCGTTCCTCGATGATGATCAGA-AGA-GCAGTGGCTACGTCCTCACTTGCGTCG 3599 Query 176341 CATATCCTACGAGCGATTGTGTGATTGAGACTGAGAAAGAAGAGGAACT 176389 | ||||| ||||||||| || ||||| ||| | || || || ||||| Sbjct 3598 CCTATCCGACGAGCGATCTCGTCATTGAAACTCACAAGGAGGAAGAACT 3550 Score = 96.9 bits (106), Expect = 4e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 176169 CAGTATATTCTGGATGCTGCTGAGGAAGCAGGAGTTGAACTCAACTACTCGTGCCGCGCT 176228 ||||| |||||||| | || |||||| || | || || ||||||||||| || Sbjct 5086 CAGTACATTCTGGACGTGGCGGAGGAACAGGGCATGGACCTGCCATACTCGTGCCGTGCC 5027 Query 176229 GGTGCCTGTTCGAGTTGTGCAGGAAAACTCATCTCGGGCACGGTAGATCAAAGCGATCAA 176288 || | ||||| | ||||||||| ||| |||| || || || || | ||| |||||| Sbjct 5026 GGCTCGTGTTCCACTTGTGCAGGCAAAATCATTTCTGGAACTGTGAACCAAGAAGATCAA 4967 Query 176289 TCGTTCCTTGATGATGACCAGATCGATGCAGGTTTCATTCTGACTTGTGTTTCATATCCT 176348 | |||||||| |||| || | | || |||| ||| || ||||| ||| | ||||| Sbjct 4966 ACCTTCCTTGACGATGGTCAATTAAAAGCTGGTTACATCCTCACTTGCGTTGCTTATCCG 4907 Query 176349 ACGAGCGATTGTGTGATTGAGACTGAGAAAGAAGAGGAACT 176389 || ||||| | || || || | | || || ||||| || Sbjct 4906 ACCAGCGACTTGGTTATCGAAAGCCACAAGGAGGAGGATCT 4866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595517733990240