Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq95781 109 6e-19 >seq95781 Length=6618 Score = 109 bits (120), Expect = 6e-19 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 167445 CAATACATCCTTGACGCGGCTGAGGAAGCGGGTGTGGACATCAACTACTCGTGCCGTGCA 167504 || ||||| || |||| ||| |||||| ||| ||||| | |||||||||||||| Sbjct 5086 CAGTACATTCTGGACGTGGCGGAGGAACAGGGCATGGACCTGCCATACTCGTGCCGTGCC 5027 Query 167505 GGCGCTTGTTCGTCGTGCGCGGGAAAACTCATCTCTGGCACCGTAGATCAAAGCGATCAA 167564 ||| | ||||| | || || || ||| |||| ||||| || || | ||| |||||| Sbjct 5026 GGCTCGTGTTCCACTTGTGCAGGCAAAATCATTTCTGGAACTGTGAACCAAGAAGATCAA 4967 Query 167565 TCCTTCCTGGACGATGATCAAATTGCCGAAGGTTTCCTTCTCACCTGTGTGTCCTATCCA 167624 ||||||| ||||||| |||| | | |||| | | ||||| || || | ||||| Sbjct 4966 ACCTTCCTTGACGATGGTCAATTAAAAGCTGGTTACATCCTCACTTGCGTTGCTTATCCG 4907 Query 167625 ACCAGCGACT 167634 |||||||||| Sbjct 4906 ACCAGCGACT 4897 Score = 95.1 bits (104), Expect = 1e-14 Identities = 134/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 167448 TACATCCTTGACGCGGCTGAGGAAGCGGGTGTGGACATCAACTACTCGTGCCGTGCAGGC 167507 ||||| || ||||| || |||| ||||| | ||| | |||||||||||||| || Sbjct 3767 TACATTCTGGACGCCGCAGAGGCGGCGGGCATCGACGTTCCATACTCGTGCCGTGCCGGT 3708 Query 167508 GCTTGTTCGTCGTGCGCGGGAAAACTCATCTCTGGCACCGTAGATCAAAGCGATCAATCC 167567 || || | | |||| ||| ||| || ||||||| || ||||||||| |||| || Sbjct 3707 GCGTGCTGCACCTGCGTGGGGAAAATCGTCTCTGGAACTGTAGATCAATCCGATGGTTCG 3648 Query 167568 TTCCTGGACGATGATCA-AATTGCCGAAGGTTTCCTTCTCACCTGTGTGTCCTATCCAAC 167626 ||||| || |||||||| || || | || | | | ||||| || || ||||||| || Sbjct 3647 TTCCTCGATGATGATCAGAAGAGCAG-TGGCTACGTCCTCACTTGCGTCGCCTATCCGAC 3589 Query 167627 CAGCGA 167632 ||||| Sbjct 3588 GAGCGA 3583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591414373733280