Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq68 91.5 3e-13 seq43 91.5 3e-13 seq18 87.8 4e-12 seq9 87.8 4e-12 seq4 87.8 4e-12 seq1 87.8 4e-12 seq24 84.2 5e-11 seq12 84.2 5e-11 seq10 84.2 5e-11 seq5 84.2 5e-11 >seq68 Length=1081329 Score = 91.5 bits (100), Expect = 3e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 165706 GCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTC 165765 ||||||| ||||||||||||||||||||| || || |||| || |||||||||||||| Sbjct 725154 GCTTGCCGCCCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTC 725095 Query 165766 GAGCCCCACG 165775 |||||||||| Sbjct 725094 GAGCCCCACG 725085 >seq43 Length=1658784 Score = 91.5 bits (100), Expect = 3e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 165706 GCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTC 165765 ||||||| ||||||||||||||||||||| || || |||| || |||||||||||||| Sbjct 461542 GCTTGCCGCCCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTC 461483 Query 165766 GAGCCCCACG 165775 |||||||||| Sbjct 461482 GAGCCCCACG 461473 >seq18 Length=2450372 Score = 87.8 bits (96), Expect = 4e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 165705 CGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTT 165764 || ||||| ||||||||||||||||||||| || || |||| || ||||||||||||| Sbjct 2014257 CGGTTGCCGCCCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTT 2014198 Query 165765 CGAGCCCCACG 165775 ||||||||||| Sbjct 2014197 CGAGCCCCACG 2014187 >seq9 Length=3666672 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||| | |||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 1098907 GCCGGCCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1098966 Query 165770 CCCACGATGGGCA 165782 |||||| | |||| Sbjct 1098967 CCCACGGTCGGCA 1098979 >seq4 Length=4340499 Score = 87.8 bits (96), Expect = 4e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 165705 CGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTT 165764 || ||||| ||||||||||||||||||||| || || |||| || ||||||||||||| Sbjct 3450183 CGATTGCCGCCCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTT 3450124 Query 165765 CGAGCCCCACG 165775 ||||||||||| Sbjct 3450123 CGAGCCCCACG 3450113 >seq1 Length=6951972 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||| | |||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 4346681 GCCGGCCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4346622 Query 165770 CCCACGATGGGCA 165782 |||||| | |||| Sbjct 4346621 CCCACGGTCGGCA 4346609 >seq24 Length=2034879 Score = 84.2 bits (92), Expect = 5e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||| | |||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 1767022 GCCGGCCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1767081 Query 165770 CCCACG 165775 |||||| Sbjct 1767082 CCCACG 1767087 >seq12 Length=2904818 Score = 84.2 bits (92), Expect = 5e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||| | |||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 1968453 GCCGGCCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1968394 Query 165770 CCCACG 165775 |||||| Sbjct 1968393 CCCACG 1968388 >seq10 Length=3149477 Score = 84.2 bits (92), Expect = 5e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||| | |||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 2300279 GCCGGCCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2300220 Query 165770 CCCACG 165775 |||||| Sbjct 2300219 CCCACG 2300214 >seq5 Length=4143896 Score = 84.2 bits (92), Expect = 5e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||| | |||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 197907 GCCGGCCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 197966 Query 165770 CCCACG 165775 |||||| Sbjct 197967 CCCACG 197972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057813726545540