Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq24 87.8 1e-12 seq2 87.8 1e-12 seq32 84.2 2e-11 >seq24 Length=2034879 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 |||||||||| ||| |||||||| | ||||| |||| || || || | || ||| Sbjct 498900 ACCAAATGGAGCGTGGATTCCTTTTGGATGTTGTAGTCGGCCAGAGTCCGGCCATCTTCC 498841 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 | || ||||||||||| ||||||||||| || || | || | ||||| || || | Sbjct 498840 AGCTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGG 498781 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTTT 43079 ||| | || || || ||| ||||||| ||| ||| || || | ||| || || || Sbjct 498780 ATCTTCGTCTTAACGTTGTCAATTGTGTCG-GAGCTCTCCACCTCGAGCGTGATCGTCTT 498722 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || | || || || || |||||||| Sbjct 498721 CCCCGTCAAGGTCTTGACGAAGATTTGCAT 498692 >seq2 Length=6181961 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | | |||||| |||| ||| |||||| || | ||||| || | | Sbjct 4454684 CCTCCACGGAGACGAAGCACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGCC 4454625 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || ||| | || |||| || ||||||||||| ||||| ||||| || || | || Sbjct 4454624 AAAGTGCGTCCATCCTCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCCGGTGGG 4454565 Query 43003 ACACCTTCTTTTTCGCTGATC-AACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | ||| || || || |||| | || ||||| || | | ||||| | ||| ||| | Sbjct 4454564 ATACCCTCCTTGTCCTGGATCTTAGTC-TTGACGTTGTCGATGGTGTC-CGAGCTCTCCA 4454507 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || || || || || || ||||| || || || || ||||| Sbjct 4454506 CCTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 4454458 >seq32 Length=1846953 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 |||||||||| ||| |||||||| | ||||| |||| || || || | || || Sbjct 247487 ACCAAATGGAGCGTGGATTCCTTTTGGATGTTGTAGTCGGCCAGAGTCCGGCCATCTTCT 247428 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 | || ||||||||||| ||||||||||| || || | || | ||||| || || | Sbjct 247427 AGCTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGG 247368 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTTT 43079 ||| || || || | | |||||| ||| ||| || || | ||| || || || Sbjct 247367 ATCTTGGTCTTAACGTTGTCGATCGTGTCG-GAGCTCTCCACCTCGAGCGTAATCGTCTT 247309 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || ||||| || || || ||||||||||| Sbjct 247308 CCCCGTTAGGGTCTTGACGAAAATTTGCAT 247279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381366076859964