Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq44 87.8 1e-12 seq32 86.0 5e-12 seq24 86.0 5e-12 seq59 82.4 6e-11 >seq44 Length=1658729 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCTTAGAATTCTCGCGTCTTCTAATT 15218 ||| ||||| || || || || |||||||| || ||| || | || |||| |||| | Sbjct 1444100 ATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCTAAGG-TCCTGCCGTCCTCTAGCT 1444158 Query 15219 GTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTT 15278 | || |||||| | || | ||| || ||||| ||||||||||| ||||| ||| | Sbjct 1444159 GCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATTCCTTCCTTGTCCTGAATCT 1444218 Query 15279 TGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338 | |||| ||| | || ||||| || | || || || | ||| || || || || | Sbjct 1444219 TCGTCTTAACATTGTCGATGGTGTCCGAGCTCTCCACCTCGAGGGTGATCGTCTTGCCGG 1444278 Query 15339 TCAGAGTTTTTACAAAAATTTGCAT 15363 | || ||||| ||||| || ||||| Sbjct 1444279 TGAGGGTTTTCACAAAGATCTGCAT 1444303 >seq32 Length=1846953 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| || ||||| || ||||| |||||||| ||| ||| | | | |||||| Sbjct 247487 ACCAAATGGAGCGTGGATTCCTTTTGGATGTTGTAGTCGGCCAGAGTCCGGCCATCTTCT 247428 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || ||||| || | ||||| || || ||||| || || ||||| ||||| Sbjct 247427 AGCTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGG 247368 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| |||| || | || || || ||| | || || || | ||||| || || Sbjct 247367 ATCTTGGTCTTAACGTTGTCGATCGTGTCGGAGCTCTCCACCTCGAGCGTAATCGTCTTC 247308 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || || || || |||||||||||| Sbjct 247307 CCCGTTAGGGTCTTGACGAAAATTTGCATA 247278 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 ||||| | ||||| || || || ||||| |||||||| || ||| | | |||| Sbjct 247946 AAAACCAGGTGAAGCGTAGACTCCTTTTGGATGTTGTAGTCCGCAAGAGTGCGGCCGTCC 247887 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | || ||||| ||| | ||||| || || ||||| || || ||||| ||||| Sbjct 247886 TCAAGCTGCTTGCCTGCGAAGATCAATCGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCC 247827 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 || ||| |||| || | || || || || | || || || ||||| || || Sbjct 247826 TGGATCTTGGTCTTCACGTTGTCGATCGTGTCCGAGCTCTCCACCTCCAAGGTGATCGTC 247767 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| || || || || |||||||||||| Sbjct 247766 TTCCCTGTGAGGGTCTTGACGAAAATTTGCATA 247734 >seq24 Length=2034879 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| || ||||| || ||||| |||||||| ||| ||| | | | |||||| Sbjct 498672 ACCAAATGGAGCGTGGATTCCTTTTGGATGTTGTAGTCGGCAAGAGTCCGGCCATCTTCT 498613 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || ||||| || | ||||| || || ||||| || || ||||| ||||| Sbjct 498612 AGCTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGG 498553 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| |||| || | || || || ||| | || || || | ||||| || || Sbjct 498552 ATCTTGGTCTTAACGTTGTCGATCGTGTCGGAGCTCTCCACCTCGAGCGTAATCGTCTTC 498493 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || || || || |||||||||||| Sbjct 498492 CCCGTTAGGGTCTTGACGAAAATTTGCATA 498463 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 ||||| | |||||| || || || || || |||||||| || ||| | | |||| Sbjct 499359 AAAACCAGATGAAGCGTAGACTCCTTCTGGATGTTGTAGTCCGCAAGAGTGCGGCCGTCC 499300 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | || ||||| ||| | ||||| || || ||||| || || ||||| ||||| Sbjct 499299 TCAAGCTGCTTGCCTGCGAAGATCAATCGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCC 499240 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 || ||| |||| || | || || || || | || || || ||||| || || Sbjct 499239 TGGATCTTGGTCTTCACGTTGTCGATCGTGTCCGAGCTCTCCACCTCCAAGGTGATCGTC 499180 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| || || || || |||||||||||| Sbjct 499179 TTCCCTGTGAGGGTCTTGACGAAAATTTGCATA 499147 >seq59 Length=1263218 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 ||||| | ||||| || || || ||||| |||||||| || ||| | | |||| Sbjct 502679 AAAACCAGGTGAAGCGTAGACTCCTTTTGGATGTTGTAGTCCGCAAGAGTGCGGCCGTCC 502738 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | || ||||| ||| | ||||| || || ||||| || || ||||| ||||| Sbjct 502739 TCAAGCTGCTTGCCTGCGAAGATCAATCGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCC 502798 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 || ||| |||| || | || || || || | || || || ||||| || || Sbjct 502799 TGGATCTTGGTCTTCACGTTGTCGATCGTGTCCGAGCTCTCCACCTCCAAGGTGATCGTC 502858 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| || || || || |||||||||||| Sbjct 502859 TTCCCTGTGAGGGTCTTGACGAAAATTTGCATA 502891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362175854143278