Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq59 84.2 2e-11 seq32 84.2 2e-11 >seq59 Length=1263218 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 || |||| ||| | ||||||||||||||| || ||||| ||||| | || | ||||| Sbjct 502679 AAAACCAGGTGAAGCGTAGACTCCTTTTGGATGTTGTAGTCCGCAAGAGTGCGGCCGTCC 502738 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 || ||||| || || || | || | || |||||| ||| ||| | ||| || ||||| Sbjct 502739 TCAAGCTGCTTGCCTGCGAAGATCAATCGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCC 502798 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCTCCGTTTCGACGGTAATGGT 19008 || || || || | | ||| || || | || |||| || | ||| || || Sbjct 502799 TGGATCTTGGTCTTCACGTTGTCGATCGTGTC-CGAGCTCTCCACCTCCAAGGTGATCGT 502857 Query 19009 TTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || ||||| | || ||||| ||||||||||| Sbjct 502858 CTTCCCTGTGAGGGTCTTGACGAAAATTTGCAT 502890 >seq32 Length=1846953 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 || |||| ||| | ||||||||||||||| || ||||| ||||| | || | ||||| Sbjct 247946 AAAACCAGGTGAAGCGTAGACTCCTTTTGGATGTTGTAGTCCGCAAGAGTGCGGCCGTCC 247887 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 || ||||| || || || | || | || |||||| ||| ||| | ||| || ||||| Sbjct 247886 TCAAGCTGCTTGCCTGCGAAGATCAATCGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCC 247827 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCTCCGTTTCGACGGTAATGGT 19008 || || || || | | ||| || || | || |||| || | ||| || || Sbjct 247826 TGGATCTTGGTCTTCACGTTGTCGATCGTGTC-CGAGCTCTCCACCTCCAAGGTGATCGT 247768 Query 19009 TTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || ||||| | || ||||| ||||||||||| Sbjct 247767 CTTCCCTGTGAGGGTCTTGACGAAAATTTGCAT 247735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414568970124652