Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq44 136 9e-27 seq317 131 4e-25 seq147 131 4e-25 seq145 131 4e-25 seq125 113 1e-19 seq6 111 4e-19 seq2 111 4e-19 >seq44 Length=1658729 Score = 136 bits (150), Expect = 9e-27 Identities = 163/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||||| || || ||||| | || || || ||||| || || ||||| | || || || Sbjct 1444086 AGCCTCAGGACGAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCTAAGGTCCTG 1444145 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 ||||| ||||| || || ||||| || || || | ||| || || ||||| |||||||| Sbjct 1444146 CCGTCCTCTAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATTCCTTCC 1444205 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGT 104520 || ||||||||||| | || ||||| || | ||| || | || | || ||||| || || Sbjct 1444206 TTGTCCTGAATCTTCGTCTTAACATTGTCGATGGTGTC-CGAGCTCTCCACCTCGAGGGT 1444264 Query 104521 AATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || || ||||| ||||| |||||||| Sbjct 1444265 GATCGTCTTGCCGGTGAGGGTTTTCACAAAGATCTGCAT 1444303 >seq317 Length=11171 Score = 131 bits (144), Expect = 4e-25 Identities = 162/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 |||| || || ||||| | ||||| || ||||| || || ||||| | | || || Sbjct 9813 AGCCGCAGGACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCCGCCAAGGTCCTG 9754 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 ||||| ||||| || || || ||||| || || | ||| || || ||||| || ||||| Sbjct 9753 CCGTCCTCTAGCTGCTTACCTGCAAAGATGAGACGCTGCTGGTCCGGAGGAATCCCTTCC 9694 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGT 104520 || ||||||||||| | || ||||| || | ||| || | || | || ||||| || || Sbjct 9693 TTGTCCTGAATCTTCGTCTTAACATTGTCGATGGTGTC-CGAGCTCTCCACCTCGAGAGT 9635 Query 104521 AATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| ||||| || ||||| ||||| |||||||| Sbjct 9634 GATCGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 9596 Score = 127 bits (140), Expect = 5e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 |||| || || ||||| | ||||| || ||||| || || ||||| | | || || Sbjct 1802 AGCCGCAGGACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCCGCCAAGGTCCTG 1743 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 ||||| ||||| || || || ||||| || || | ||| || || ||||| || ||||| Sbjct 1742 CCGTCCTCTAGCTGCTTACCTGCAAAGATGAGACGCTGCTGGTCCGGAGGAATCCCTTCC 1683 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGT 104520 || ||||||||||| | || || || || | ||| || | || | || ||||| || || Sbjct 1682 TTGTCCTGAATCTTCGTCTTAACGTTGTCAATGGTGTC-CGAGCTCTCCACCTCGAGAGT 1624 Query 104521 AATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| ||||| || ||||| ||||| |||||||| Sbjct 1623 GATCGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 1585 Score = 113 bits (124), Expect = 1e-19 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 |||| || || ||||| | || || || ||||| || || ||||| | |||||| || Sbjct 2486 AGCCGGAGGACGAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCTAGAGTCCTG 2427 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 ||||| || || || ||||| || || || || | ||| || || || || ||||||||| Sbjct 2426 CCGTCCTCAAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGAATTCCTTCT 2367 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGT 104520 || ||||| ||||| | || || || || | || || | || | || ||||| || || Sbjct 2366 TTGTCCTGGATCTTGGTCTTCACGTTGTCAATCGTGTC-CGAGCTCTCCACCTCCAGGGT 2308 Query 104521 AATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || || || || || || |||||||| Sbjct 2307 GATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 2269 Score = 109 bits (120), Expect = 1e-18 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | || || || ||||| || ||||| || | || || | || || Sbjct 2709 AAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTATAATCCGCCAGGGTACGCCCATC 2650 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || || ||||| || || | ||| || || ||||| || ||||||||||| Sbjct 2649 CTCGAGCTGCTTCCCGGCAAAGATGAGACGCTGCTGGTCCGGAGGAATGCCTTCTTTATC 2590 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAG 104525 ||| ||||| | || ||||| || | ||| || | || | || ||||| || || || | Sbjct 2589 CTGGATCTTGGTCTTCACATTGTCGATGGTGTC-CGAGCTCTCCACCTCCAGGGTGATGG 2531 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| || || || || || || || |||||||| Sbjct 2530 TCTTGCCGGTGAGAGTCTTGACGAAAATCTGCAT 2497 >seq147 Length=303747 Score = 131 bits (144), Expect = 4e-25 Identities = 162/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 |||| || || ||||| | ||||| || ||||| || || ||||| | | || || Sbjct 247229 AGCCGCAGGACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCCGCCAAGGTCCTG 247170 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 ||||| ||||| || || || ||||| || || | ||| || || ||||| || ||||| Sbjct 247169 CCGTCCTCTAGCTGCTTACCTGCAAAGATGAGACGCTGCTGGTCCGGAGGAATCCCTTCC 247110 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGT 104520 || ||||||||||| | || ||||| || | ||| || | || | || ||||| || || Sbjct 247109 TTGTCCTGAATCTTCGTCTTAACATTGTCGATGGTGTC-CGAGCTCTCCACCTCGAGAGT 247051 Query 104521 AATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| ||||| || ||||| ||||| |||||||| Sbjct 247050 GATCGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 247012 >seq145 Length=315748 Score = 131 bits (144), Expect = 4e-25 Identities = 162/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||||| || || ||||| | || || || ||||| || || ||||| | | || || Sbjct 114063 AGCCTCAGGACGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGCCAAGGTCCTG 114004 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 ||||| ||||| || || ||||| || || || | ||| || || ||||| || |||||| Sbjct 114003 CCGTCCTCTAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATCCCTTCT 113944 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGT 104520 || ||||||||||| | || ||||| || | ||| || | || | || ||||| || || Sbjct 113943 TTGTCCTGAATCTTCGTCTTAACATTGTCGATGGTGTC-CGAGCTCTCCACCTCGAGGGT 113885 Query 104521 AATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || || ||||| ||||| |||||||| Sbjct 113884 GATCGTCTTGCCGGTGAGGGTTTTCACAAAGATCTGCAT 113846 >seq125 Length=444406 Score = 113 bits (124), Expect = 1e-19 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | || || || ||||| || ||||| || | || || | || || Sbjct 271725 AAGGACGAGATGGAGGGTCGACTCCTTCTGGATGTTATAATCCGCCAGGGTACGCCCATC 271666 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || || ||||| || || | ||| || || ||||| || ||||||||||| Sbjct 271665 CTCGAGCTGCTTCCCGGCAAAGATGAGACGCTGCTGGTCCGGAGGAATGCCTTCTTTATC 271606 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAG 104525 ||| ||||| | || ||||| || | ||| || | || | || ||||| || ||||| | Sbjct 271605 CTGGATCTTGGTCTTCACATTGTCGATGGTGTC-CGAGCTCTCCACCTCCAGGGTAATGG 271547 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| || || || || || || || |||||||| Sbjct 271546 TCTTGCCGGTGAGAGTCTTGACGAAAATCTGCAT 271513 >seq6 Length=4135178 Score = 111 bits (122), Expect = 4e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || |||||||| | | || |||||||| || || || || || Sbjct 622008 GTCGACTCCTTCTGGATGTTATAGTCCGCCAACGTCCTACCGTCCTCGAGCTGCTTGCCC 621949 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| || |||||||| ||||| || || ||||| ||||| | || Sbjct 621948 GCAAAGATGAGGCGCTGCTGGTCAGGAGGAATTCCCTCCTTGTCCTGGATCTTAGTCTTC 621889 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | |||||| || | || ||||| | || || ||||| ||||| | || Sbjct 621888 ACATTATCGATGGTATCAG-AGCTCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAGGT 621830 Query 104542 TTTTACAAATATCTGCAT 104559 || || ||||||||||| Sbjct 621829 CTTGACGAATATCTGCAT 621812 Score = 100 bits (110), Expect = 7e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||||| || || || || | || || || ||||| || || ||||| | ||||| | Sbjct 622485 AGCCTGAGAACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCCAGAGTGCGT 622426 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || || || || || ||||| ||||| || | | ||| || || || || || || || Sbjct 622425 CCATCCTCGAGCTGCTTTCCGGCAAAGATCAAGCGCTGCTGGTCCGGGGGGATACCCTCC 622366 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGT 104520 || ||||||||||| | || || || || | ||| || | || | || ||||| || || Sbjct 622365 TTGTCCTGAATCTTAGTCTTGACGTTGTCGATGGTGTC-CGAGCTCTCCACCTCAAGGGT 622307 Query 104521 AATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| ||||| || || || || || |||||||| Sbjct 622306 GATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 622268 >seq2 Length=6181961 Score = 111 bits (122), Expect = 4e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || |||||||| | | || |||||||| || || || || || Sbjct 4454198 GTCGACTCCTTCTGGATGTTATAGTCCGCCAACGTCCTACCGTCCTCGAGCTGCTTGCCC 4454139 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| || |||||||| ||||| || || ||||| ||||| | || Sbjct 4454138 GCAAAGATGAGGCGCTGCTGGTCAGGAGGAATTCCCTCCTTGTCCTGGATCTTAGTCTTC 4454079 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | |||||| || | || ||||| | || || ||||| ||||| | || Sbjct 4454078 ACATTATCGATGGTATCAG-AGCTCTCCACCTCCAAGGTGATTGTCTTGCCAGTCAAGGT 4454020 Query 104542 TTTTACAAATATCTGCAT 104559 || || ||||||||||| Sbjct 4454019 CTTGACGAATATCTGCAT 4454002 Score = 109 bits (120), Expect = 1e-18 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | ||| || || || || || || ||||| | ||||||| || || Sbjct 4454898 AAGAACCAGGTGGAGTGTCGACTCCTTTTGGATGTTGTAGTCCGCGAGAGTTCGTCCATC 4454839 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || ||||||||||| || | | ||| || || || || || || || || || Sbjct 4454838 CTCGAGCTGCTTTCCAGCAAAGATCAAGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTC 4454779 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAG 104525 ||| ||||| | || ||||| || | ||| || | || | || ||||| || ||||| | Sbjct 4454778 CTGGATCTTAGTCTTGACATTATCGATGGTGTC-CGAGCTCTCCACCTCAAGCGTAATTG 4454720 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| ||||| || || || || || |||||||| Sbjct 4454719 TCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 4454686 Score = 107 bits (118), Expect = 4e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||| || || ||||| | ||||||| || || || || || || || Sbjct 4455338 GTCGATTCCTTCTGGATGTTGTAGTCGGCGAGAGTTCGTCCATCCTCGAGCTGCTTCCCC 4455279 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| || || || || || || || || ||||| ||||||| || Sbjct 4455278 GCAAAGATGAGACGCTGCTGGTCCGGTGGGATCCCCTCCTTGTCCTGGATCTTTGTCTTG 4455219 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||| || | || | || ||||| || || || ||||| ||||| || || Sbjct 4455218 ACGTTGTCGATGGTGTC-CGAGCTCTCCACCTCAAGCGTGATGGTCTTGCCAGTCAGGGT 4455160 Query 104542 TTTTACAAATATCTGCAT 104559 || || ||||||||||| Sbjct 4455159 CTTGACGAATATCTGCAT 4455142 Score = 98.7 bits (108), Expect = 2e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | | || || ||||| || || || || ||| Sbjct 4455566 GTCGACTCCTTCTGGATGTTGTAGTCCGCCAATGTCCTCCCGTCCTCGAGCTGCTTGCCA 4455507 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | | ||| || || || || || || || || ||||| ||||| | || Sbjct 4455506 GCAAAGATCAAACGCTGCTGGTCCGGTGGGATCCCCTCCTTGTCCTGGATCTTGGTCTTG 4455447 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | ||| || | || | || ||||| || || || ||||| ||||| || || Sbjct 4455446 ACATTGTCGATGGTGTC-CGAGCTCTCCACCTCAAGCGTGATGGTCTTGCCAGTCAGGGT 4455388 Query 104542 TTTTACAAATATCTGCAT 104559 || || ||||||||||| Sbjct 4455387 CTTGACGAATATCTGCAT 4455370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151387217762664